Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression
Wu, Steven J., Furlan, Scott N., Mihalas, Anca B., Kaya-Okur, Hatice S., Feroze, Abdullah H., Emerson, Samuel N., Zheng, Ye, Carson, Kalee, Cimino, Patrick J., Keene, C. Dirk, Sarthy, Jay F., Gottardo, Raphael, Ahmad, Kami, Henikoff, Steven, Patel, Anoop P.
Published in Nature biotechnology (01.07.2021)
Published in Nature biotechnology (01.07.2021)
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Caveats for the use of operational electronic health record data in comparative effectiveness research
Hersh, William R, Weiner, Mark G, Embi, Peter J, Logan, Judith R, Payne, Philip R O, Bernstam, Elmer V, Lehmann, Harold P, Hripcsak, George, Hartzog, Timothy H, Cimino, James J, Saltz, Joel H
Published in Medical care (01.08.2013)
Published in Medical care (01.08.2013)
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Comparison of tumor-associated YAP1 fusions identifies a recurrent set of functions critical for oncogenesis
Szulzewsky, Frank, Arora, Sonali, Hoellerbauer, Pia, King, Claire, Nathan, Erica, Chan, Marina, Cimino, Patrick J, Ozawa, Tatsuya, Kawauchi, Daisuke, Pajtler, Kristian W, Gilbertson, Richard J, Paddison, Patrick J, Vasioukhin, Valeri, Gujral, Taranjit S, Holland, Eric C
Published in Genes & development (01.08.2020)
Published in Genes & development (01.08.2020)
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Human Mesenchymal glioblastomas are characterized by an increased immune cell presence compared to Proneural and Classical tumors
Kaffes, Ioannis, Szulzewsky, Frank, Chen, Zhihong, Herting, Cameron J., Gabanic, Ben, Velázquez Vega, José E., Shelton, Jennifer, Switchenko, Jeffrey M., Ross, James L., McSwain, Leon F., Huse, Jason T., Westermark, Bengt, Nelander, Sven, Forsberg-Nilsson, Karin, Uhrbom, Lene, Maturi, Naga Prathyusha, Cimino, Patrick. J., Holland, Eric C., Kettenmann, Helmut, Brennan, Cameron W., Brat, Daniel J., Hambardzumyan, Dolores
Published in Oncoimmunology (02.11.2019)
Published in Oncoimmunology (02.11.2019)
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MYB/MYBL1-altered gliomas frequently harbor truncations and non-productive fusions in the MYB and MYBL1 genes
Chung, Hye-Jung, Rajan, Sharika, Wu, Zhichao, Ferrone, Christina K., Raffeld, Mark, Lee, Ina, Gagan, Jeffrey, Dampier, Christopher, Abdullaev, Zied, Tyagi, Manoj, Cimino, Patrick. J., Quezado, Martha, Aldape, Kenneth
Published in Acta neuropathologica (18.10.2024)
Published in Acta neuropathologica (18.10.2024)
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A rapid matrix-assisted laser desorption ionization-time of flight mass spectrometry-based method for single-plasmid tracking in an outbreak of carbapenem-resistant Enterobacteriaceae
Lau, Anna F, Wang, Honghui, Weingarten, Rebecca A, Drake, Steven K, Suffredini, Anthony F, Garfield, Mark K, Chen, Yong, Gucek, Marjan, Youn, Jung-Ho, Stock, Frida, Tso, Hanna, DeLeo, Jim, Cimino, James J, Frank, Karen M, Dekker, John P
Published in Journal of clinical microbiology (01.08.2014)
Published in Journal of clinical microbiology (01.08.2014)
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Intraoperative assessment of skull base tumors using stimulated Raman scattering microscopy
Shin, Kseniya S., Francis, Andrew T., Hill, Andrew H., Laohajaratsang, Mint, Cimino, Patrick J., Latimer, Caitlin S., Gonzalez-Cuyar, Luis F., Sekhar, Laligam N., Juric-Sekhar, Gordana, Fu, Dan
Published in Scientific reports (31.12.2019)
Published in Scientific reports (31.12.2019)
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Increased HOXA5 expression provides a selective advantage for gain of whole chromosome 7 in IDH wild-type glioblastoma
Cimino, Patrick J, Kim, Youngmi, Wu, Hua-Jun, Alexander, Jes, Wirsching, Hans-Georg, Szulzewsky, Frank, Pitter, Ken, Ozawa, Tatsuya, Wang, Jiguang, Vazquez, Julio, Arora, Sonali, Rabadan, Raul, Levine, Ross, Michor, Franziska, Holland, Eric C
Published in Genes & development (01.04.2018)
Published in Genes & development (01.04.2018)
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Standardizing data exchange for clinical research protocols and case report forms: An assessment of the suitability of the Clinical Data Interchange Standards Consortium (CDISC) Operational Data Model (ODM)
Huser, Vojtech, Sastry, Chandan, Breymaier, Matthew, Idriss, Asma, Cimino, James J.
Published in Journal of biomedical informatics (01.10.2015)
Published in Journal of biomedical informatics (01.10.2015)
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PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies
Yue, Zongliang, Zhang, Eric, Xu, Clark, Khurana, Sunny, Batra, Nishant, Dang, Son Do Hai, Cimino, James J, Chen, Jake Y
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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A kinase-deficient NTRK2 splice variant predominates in glioma and amplifies several oncogenic signaling pathways
Pattwell, Siobhan S., Arora, Sonali, Cimino, Patrick J., Ozawa, Tatsuya, Szulzewsky, Frank, Hoellerbauer, Pia, Bonifert, Tobias, Hoffstrom, Benjamin G., Boiani, Norman E., Bolouri, Hamid, Correnti, Colin E., Oldrini, Barbara, Silber, John R., Squatrito, Massimo, Paddison, Patrick J., Holland, Eric C.
Published in Nature communications (12.06.2020)
Published in Nature communications (12.06.2020)
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Journal Article
Neuropathologic features of central nervous system hemangioblastoma
Yoda, Rebecca A, Cimino, Patrick J
Published in Journal of pathology and translational medicine (01.05.2022)
Published in Journal of pathology and translational medicine (01.05.2022)
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Journal Article
Multidimensional scaling of diffuse gliomas: application to the 2016 World Health Organization classification system with prognostically relevant molecular subtype discovery
Cimino, Patrick J, Zager, Michael, McFerrin, Lisa, Wirsching, Hans-Georg, Bolouri, Hamid, Hentschel, Bettina, von Deimling, Andreas, Jones, David, Reifenberger, Guido, Weller, Michael, Holland, Eric C
Published in Acta neuropathologica communications (22.05.2017)
Published in Acta neuropathologica communications (22.05.2017)
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Journal Article
Impending Challenges for the Use of Big Data
Huser, Vojtech, MD, PhD, Cimino, James J., MD
Published in International journal of radiation oncology, biology, physics (01.07.2016)
Published in International journal of radiation oncology, biology, physics (01.07.2016)
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Journal Article
A Randomized Trial Comparing Telemedicine Case Management with Usual Care in Older, Ethnically Diverse, Medically Underserved Patients with Diabetes Mellitus: 5 Year Results of the IDEATel Study
Shea, Steven, Weinstock, Ruth S., Teresi, Jeanne A., Palmas, Walter, Starren, Justin, Cimino, James J., Lai, Albert M., Field, Lesley, Morin, Philip C., Goland, Robin, Izquierdo, Roberto E., Ebner, Susana, Silver, Stephanie, Petkova, Eva, Kong, Jian, Eimicke, Joseph P.
Published in Journal of the American Medical Informatics Association : JAMIA (01.07.2009)
Published in Journal of the American Medical Informatics Association : JAMIA (01.07.2009)
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