Inferring directional relationships in microbial communities using signed Bayesian networks
Sazal, Musfiqur, Mathee, Kalai, Ruiz-Perez, Daniel, Cickovski, Trevor, Narasimhan, Giri
Published in BMC genomics (21.12.2020)
Published in BMC genomics (21.12.2020)
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Journal Article
MATria: a unified centrality algorithm
Cickovski, Trevor, Aguiar-Pulido, Vanessa, Narasimhan, Giri
Published in BMC bioinformatics (06.06.2019)
Published in BMC bioinformatics (06.06.2019)
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Journal Article
Potential Autoimmunity Resulting from Molecular Mimicry between SARS-CoV-2 Spike and Human Proteins
Nunez-Castilla, Janelle, Stebliankin, Vitalii, Baral, Prabin, Balbin, Christian A, Sobhan, Masrur, Cickovski, Trevor, Mondal, Ananda Mohan, Narasimhan, Giri, Chapagain, Prem, Mathee, Kalai, Siltberg-Liberles, Jessica
Published in Viruses (28.06.2022)
Published in Viruses (28.06.2022)
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Journal Article
The mechanisms of microtubule catastrophe and rescue: implications from analysis of a dimer-scale computational model
Margolin, Gennady, Gregoretti, Ivan V, Cickovski, Trevor M, Li, Chunlei, Shi, Wei, Alber, Mark S, Goodson, Holly V
Published in Molecular biology of the cell (15.02.2012)
Published in Molecular biology of the cell (15.02.2012)
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Journal Article
Differences in gut microbiota between Dutch and South-Asian Surinamese: potential implications for type 2 diabetes mellitus
Nayman, Eric I, Schwartz, Brooke A, Polmann, Michaela, Gumabong, Alayna C, Nieuwdorp, Max, Cickovski, Trevor, Mathee, Kalai
Published in Scientific reports (26.02.2024)
Published in Scientific reports (26.02.2024)
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Journal Article
ATria: a novel centrality algorithm applied to biological networks
Cickovski, Trevor, Peake, Eli, Aguiar-Pulido, Vanessa, Narasimhan, Giri
Published in BMC bioinformatics (07.06.2017)
Published in BMC bioinformatics (07.06.2017)
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Journal Article
Prior exposure to microcystin alters host gut resistome and is associated with dysregulated immune homeostasis in translatable mouse models
Saha, Punnag, Bose, Dipro, Stebliankin, Vitalii, Cickovski, Trevor, Seth, Ratanesh K., Porter, Dwayne E., Brooks, Bryan W., Mathee, Kalai, Narasimhan, Giri, Colwell, Rita, Scott, Geoff I., Chatterjee, Saurabh
Published in Scientific reports (07.07.2022)
Published in Scientific reports (07.07.2022)
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Journal Article
Microbiome Dysbiosis Shows Strong Association of Gut-Derived Altered Metabolomic Profile in Gulf War Chronic Multisymptom Illness Symptom Persistence Following Western Diet Feeding and Development of Obesity
Bose, Dipro, Stebliankin, Vitalli, Cickovski, Trevor, Saha, Punnag, Trivedi, Ayushi, Roy, Subhajit, More, Madhura, Tuteja, Ashok, Mathee, Kalai, Narasimhan, Giri, Chatterjee, Saurabh
Published in International journal of molecular sciences (01.02.2023)
Published in International journal of molecular sciences (01.02.2023)
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Journal Article
MDLab: A molecular dynamics simulation prototyping environment
Cickovski, Trevor, Chatterjee, Santanu, Wenger, Jacob, Sweet, Christopher R, Izaguirre, Jesús A
Published in Journal of computational chemistry (01.05.2010)
Published in Journal of computational chemistry (01.05.2010)
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Journal Article
A framework for three-dimensional simulation of morphogenesis
Cickovski, T.M., Chengbang Huang, Chaturvedi, R., Glimm, T., Hentschel, H.G.E., Alber, M.S., Glazier, J.A., Newman, S.A., Izaguirre, J.A.
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.10.2005)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.10.2005)
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Journal Article
From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development
Cickovski, Trevor, Aras, Kedar, Swat, Maciej, Merks, Roeland M.H., Glimm, Tilmann, Hentschel, H. George E., Alber, Mark S., Glazier, James A., Newman, Stuart A., Izaguirre, Jesus A.
Published in Computing in science & engineering (01.07.2007)
Published in Computing in science & engineering (01.07.2007)
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Journal Article
Attention Deficit Hyperactivity Disorder
Cickovski, Trevor, Mathee, Kalai, Aguirre, Gloria, Tatke, Gorakh, Hermida, Alejandro, Narasimhan, Giri, Stollstorff, Melanie
Published in PloS one (18.08.2023)
Published in PloS one (18.08.2023)
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Journal Article
Sa1859 INTERROGATING PHAGOCYTES AND LAMINA PROPRIA CELLS TO DISCOVER PATHOBIONTS IN CROHN'S DISEASE
Jacobsen, Gillian E., Fernández, Irina, Gonzalez-Horta, Eddy E., Hazime, Hajar, Mendygral, Payton O., Quintero, Maria Alejandra, Jiang, Chunsu, Deshpande, Amar R., Sussman, Daniel, Kerman, David H., Proksell, Siobhan, Cickovski, Trevor, Abreu, Maria T.
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
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Journal Article
Microbiome depiction through user-adapted bioinformatic pipelines and parameters
Nayman, Eric I., Schwartz, Brooke A., Polanco, Fantaysia C., Firek, Alexandra K., Gumabong, Alayna C., Hofstee, Nolan J., Narasimhan, Giri, Cickovski, Trevor, Mathee, Kalai
Published in Journal of medical microbiology (01.01.2023)
Published in Journal of medical microbiology (01.01.2023)
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Journal Article
Lower respiratory tract microbiome composition and community interactions in smokers
Campos, Michael, Cickovski, Trevor, Fernandez, Mitch, Jaric, Melita, Wanner, Adam, Holt, Gregory, Donna, Elio, Mendes, Eliana, Silva-Herzog, Eugenia, Schneper, Lisa, Segal, Jonathan, Amador, David Moraga, Riveros, Juan Daniel, Aguiar-Pulido, Vanessa, Banerjee, Santanu, Salathe, Matthias, Mathee, Kalai, Narasimhan, Giri
Published in Access microbiology (2023)
Published in Access microbiology (2023)
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Journal Article