RNA transcript sequencing reveals inorganic sulfur compound oxidation pathways in the acidophile Acidithiobacillus ferrivorans
Christel, Stephan, Fridlund, Jimmy, Buetti-Dinh, Antoine, Buck, Moritz, Watkin, Elizabeth L., Dopson, Mark
Published in FEMS microbiology letters (01.04.2016)
Published in FEMS microbiology letters (01.04.2016)
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Journal Article
How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities
Berkelmann, Dirk, Schneider, Dominik, Engelhaupt, Martin, Heinemann, Melanie, Christel, Stephan, Wijayanti, Marini, Meryandini, Anja, Daniel, Rolf
Published in Frontiers in microbiology (10.10.2018)
Published in Frontiers in microbiology (10.10.2018)
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Journal Article
Low temperature, autotrophic microbial denitrification using thiosulfate or thiocyanate as electron donor
Broman, Elias, Jawad, Abbtesaim, Wu, Xiaofen, Christel, Stephan, Ni, Gaofeng, Lopez-Fernandez, Margarita, Sundkvist, Jan-Eric, Dopson, Mark
Published in Biodegradation (Dordrecht) (01.08.2017)
Published in Biodegradation (Dordrecht) (01.08.2017)
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Journal Article
Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition
Buetti-Dinh, Antoine, Galli, Vanni, Bellenberg, Sören, Ilie, Olga, Herold, Malte, Christel, Stephan, Boretska, Mariia, Pivkin, Igor V., Wilmes, Paul, Sand, Wolfgang, Vera, Mario, Dopson, Mark
Published in Biotechnology reports (Amsterdam, Netherlands) (01.06.2019)
Published in Biotechnology reports (Amsterdam, Netherlands) (01.06.2019)
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Journal Article
Weak Iron Oxidation by Sulfobacillus thermosulfidooxidans Maintains a Favorable Redox Potential for Chalcopyrite Bioleaching
Christel, Stephan, Herold, Malte, Bellenberg, Sören, Buetti-Dinh, Antoine, El Hajjami, Mohamed, Pivkin, Igor V, Sand, Wolfgang, Wilmes, Paul, Poetsch, Ansgar, Vera, Mario, Dopson, Mark
Published in Frontiers in microbiology (12.12.2018)
Published in Frontiers in microbiology (12.12.2018)
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Journal Article
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations
Buetti-Dinh, Antoine, Herold, Malte, Christel, Stephan, El Hajjami, Mohamed, Delogu, Francesco, Ilie, Olga, Bellenberg, Sören, Wilmes, Paul, Poetsch, Ansgar, Sand, Wolfgang, Vera, Mario, Pivkin, Igor V, Friedman, Ran, Dopson, Mark
Published in BMC bioinformatics (21.01.2020)
Published in BMC bioinformatics (21.01.2020)
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Journal Article
Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils
Högfors-Rönnholm, Eva, Lundin, Daniel, Brambilla, Diego, Christel, Stephan, Lopez-Fernandez, Margarita, Lillhonga, Tom, Engblom, Sten, Österholm, Peter, Dopson, Mark
Published in Communications earth & environment (01.12.2022)
Published in Communications earth & environment (01.12.2022)
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Journal Article
Plant–Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System
Cregger, Melissa A., Carper, Dana L., Christel, Stephan, Doktycz, Mitchel J., Labbé, Jessy, Michener, Joshua K., Dove, Nicholas C., Johnston, Eric R., Moore, Jessica A. M., Vélez, Jessica M., Morrell-Falvey, Jennifer, Muchero, Wellington, Pelletier, Dale A., Retterer, Scott, Tschaplinski, Timothy J., Tuskan, Gerald A., Weston, David J., Schadt, Christopher W.
Published in Phytobiomes journal (01.01.2021)
Published in Phytobiomes journal (01.01.2021)
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Journal Article
Indirect DNA extraction method suitable for acidic soil with high clay content
Högfors-Rönnholm, Eva, Christel, Stephan, Engblom, Sten, Dopson, Mark
Published in MethodsX (01.01.2018)
Published in MethodsX (01.01.2018)
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Journal Article
Systems biology of acidophile biofilms for efficient metal extraction
Buetti-Dinh, Antoine, Herold, Malte, Christel, Stephan, Hajjami, Mohamed El, Bellenberg, Sören, Ilie, Olga, Wilmes, Paul, Poetsch, Ansgar, Sand, Wolfgang, Vera, Mario, Pivkin, Igor V., Dopson, Mark
Published in Scientific data (07.07.2020)
Published in Scientific data (07.07.2020)
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Journal Article
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials
Högfors-Rönnholm, Eva, Lopez-Fernandez, Margarita, Christel, Stephan, Brambilla, Diego, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I-Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Harmon-Smith, Miranda, Eloe-Fadrosh, Emiley A., Lundin, Daniel, Engblom, Sten, Dopson, Mark
Published in Scientific data (16.10.2019)
Published in Scientific data (16.10.2019)
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Journal Article
Syngas as Electron Donor for Sulfate and Thiosulfate Reducing Haloalkaliphilic Microorganisms in a Gas-Lift Bioreactor
Plugge, Caroline M., Sousa, João A. B., Christel, Stephan, Dopson, Mark, Bijmans, Martijn F. M., Stams, Alfons J. M., Diender, Martijn
Published in Microorganisms (Basel) (22.09.2020)
Published in Microorganisms (Basel) (22.09.2020)
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Journal Article
Potential of single and designed mixed cultures to enhance the bioleaching of chalcopyrite by oxidation-reduction potential control
Ríos, Daniela, Bellenberg, Sören, Christel, Stephan, Lindblom, Pontus, Giroux, Tori, Dopson, Mark
Published in Hydrometallurgy (01.02.2024)
Published in Hydrometallurgy (01.02.2024)
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Journal Article
Chemical and microbiological evaluation of novel chemical treatment methods for acid sulfate soils
Högfors-Rönnholm, Eva, Christel, Stephan, Dalhem, Krister, Lillhonga, Tom, Engblom, Sten, Österholm, Peter, Dopson, Mark
Published in The Science of the total environment (01.06.2018)
Published in The Science of the total environment (01.06.2018)
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Journal Article
Targeting oxidation sites on boreal acid sulfate soil macropore surfaces mitigates acid and metal release to recipient water streams
Högfors-Rönnholm, Eva, Stén, Pekka, Christel, Stephan, Fröjdö, Sören, Lillhonga, Tom, Nowak, Paweł, Österholm, Peter, Dopson, Mark, Engblom, Sten
Published in Applied geochemistry (01.11.2023)
Published in Applied geochemistry (01.11.2023)
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Journal Article
Acidithiobacillus ferrivorans SS3 presents little RNA transcript response related to cold stress during growth at 8 °C suggesting it is a eurypsychrophile
Christel, Stephan, Fridlund, Jimmy, Watkin, Elizabeth L., Dopson, Mark
Published in Extremophiles : life under extreme conditions (01.11.2016)
Published in Extremophiles : life under extreme conditions (01.11.2016)
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Journal Article
Automated Microscopic Analysis of Metal Sulfide Colonization by Acidophilic Microorganisms
Bellenberg, Sören, Buetti-Dinh, Antoine, Galli, Vanni, Ilie, Olga, Herold, Malte, Christel, Stephan, Boretska, Mariia, Pivkin, Igor V, Wilmes, Paul, Sand, Wolfgang, Vera, Mario, Dopson, Mark
Published in Applied and environmental microbiology (01.10.2018)
Published in Applied and environmental microbiology (01.10.2018)
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Journal Article
Acidithiobacillus ferrivorans SS3 presents little RNA transcript response related to cold stress during growth at 8 degree C suggesting it is a eurypsychrophile
Christel, Stephan, Fridlund, Jimmy, Watkin, Elizabeth L, Dopson, Mark
Published in Extremophiles : life under extreme conditions (01.11.2016)
Published in Extremophiles : life under extreme conditions (01.11.2016)
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Journal Article
Correction for Bellenberg et al., "Automated Microscopic Analysis of Metal Sulfide Colonization by Acidophilic Microorganisms"
Bellenberg, Sören, Buetti-Dinh, Antoine, Galli, Vanni, Ilie, Olga, Herold, Malte, Christel, Stephan, Boretska, Mariia, Pivkin, Igor V, Wilmes, Paul, Sand, Wolfgang, Vera, Mario, Dopson, Mark
Published in Applied and environmental microbiology (21.01.2020)
Published in Applied and environmental microbiology (21.01.2020)
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Journal Article