Wnt1 silences chemokine genes in dendritic cells and induces adaptive immune resistance in lung adenocarcinoma
Kerdidani, Dimitra, Chouvardas, Panagiotis, Arjo, Ares Rocanin, Giopanou, Ioanna, Ntaliarda, Giannoula, Guo, Yu Amanda, Tsikitis, Mary, Kazamias, Georgios, Potaris, Konstantinos, Stathopoulos, Georgios T., Zakynthinos, Spyros, Kalomenidis, Ioannis, Soumelis, Vassili, Kollias, George, Tsoumakidou, Maria
Published in Nature communications (29.03.2019)
Published in Nature communications (29.03.2019)
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Journal Article
Mir221/222 drive synovial hyperplasia and arthritis by targeting cell cycle inhibitors and chromatin remodeling components
Roumelioti, Fani, Tzaferis, Christos, Konstantopoulos, Dimitris, Papadopoulou, Dimitra, Prados, Alejandro, Sakkou, Maria, Liakos, Anastasios, Chouvardas, Panagiotis, Meletakos, Theodore, Pandis, Yiannis, Karagianni, Niki, Denis, Maria C, Fousteri, Maria, Armaka, Maria, Kollias, George
Published in eLife (05.09.2024)
Published in eLife (05.09.2024)
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Journal Article
Bladder cancer organoids as a functional system to model different disease stages and therapy response
Minoli, Martina, Cantore, Thomas, Hanhart, Daniel, Kiener, Mirjam, Fedrizzi, Tarcisio, La Manna, Federico, Karkampouna, Sofia, Chouvardas, Panagiotis, Genitsch, Vera, Rodriguez-Calero, Antonio, Compérat, Eva, Klima, Irena, Gasperini, Paola, Kiss, Bernhard, Seiler, Roland, Demichelis, Francesca, Thalmann, George N., Kruithof-de Julio, Marianna
Published in Nature communications (18.04.2023)
Published in Nature communications (18.04.2023)
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Journal Article
LnCompare: gene set feature analysis for human long non-coding RNAs
Carlevaro-Fita, Joana, Liu, Leibo, Zhou, Yuan, Zhang, Shan, Chouvardas, Panagiotis, Johnson, Rory, Li, Jianwei
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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Journal Article
Col6a1+/CD201+ mesenchymal cells regulate intestinal morphogenesis and homeostasis
Melissari, Maria-Theodora, Henriques, Ana, Tzaferis, Christos, Prados, Alejandro, Sarris, Michalis E., Chalkidi, Niki, Mavroeidi, Dimitra, Chouvardas, Panagiotis, Grammenoudi, Sofia, Kollias, George, Koliaraki, Vasiliki
Published in Cellular and molecular life sciences : CMLS (01.01.2022)
Published in Cellular and molecular life sciences : CMLS (01.01.2022)
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Journal Article
An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis
Karagianni, Niki, Kranidioti, Ksanthi, Fikas, Nikolaos, Tsochatzidou, Maria, Chouvardas, Panagiotis, Denis, Maria C, Kollias, George, Nikolaou, Christoforos
Published in PLoS computational biology (01.05.2019)
Published in PLoS computational biology (01.05.2019)
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Journal Article
ScLinear predicts protein abundance at single-cell resolution
Hanhart, Daniel, Gossi, Federico, Rapsomaniki, Maria Anna, Kruithof-de Julio, Marianna, Chouvardas, Panagiotis
Published in Communications biology (04.03.2024)
Published in Communications biology (04.03.2024)
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Journal Article
Combination of subtherapeutic anti-TNF dose with dasatinib restores clinical and molecular arthritogenic profiles better than standard anti-TNF treatment
Ntari, Lydia, Nikolaou, Christoforos, Kranidioti, Ksanthi, Papadopoulou, Dimitra, Christodoulou-Vafeiadou, Eleni, Chouvardas, Panagiotis, Meier, Florian, Geka, Christina, Denis, Maria C, Karagianni, Niki, Kollias, George
Published in Journal of translational medicine (23.04.2021)
Published in Journal of translational medicine (23.04.2021)
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Journal Article
Repurposing the antipsychotic drug amisulpride for targeting synovial fibroblast activation in arthritis
Papadopoulou, Dimitra, Roumelioti, Fani, Tzaferis, Christos, Chouvardas, Panagiotis, Pedersen, Anna-Kathrine, Charalampous, Filippos, Christodoulou-Vafeiadou, Eleni, Ntari, Lydia, Karagianni, Niki, Denis, Maria C, Olsen, Jesper V, Matralis, Alexios N, Kollias, George
Published in JCI insight (08.05.2023)
Published in JCI insight (08.05.2023)
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Journal Article
The conserved long non-coding RNA CARMA regulates cardiomyocyte differentiation
Kay, Maryam, Soltani, Bahram M, Nemir, Mohamed, Aghagolzadeh, Parisa, Pezzuto, Iole, Chouvardas, Panagiotis, Ruberto, Francesco, Movahedi, Fatemeh, Ansari, Hassan, Baharvand, Hossein, Pedrazzini, Thierry
Published in Cardiovascular research (27.07.2022)
Published in Cardiovascular research (27.07.2022)
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Journal Article
A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification
Plaisance, Isabelle, Chouvardas, Panagiotis, Sun, Yuliangzi, Nemir, Mohamed, Aghagolzadeh, Parisa, Aminfar, Farhang, Shen, Sophie, Shim, Woo Jun, Rochais, Francesca, Johnson, Rory, Palpant, Nathan, Pedrazzini, Thierry
Published in Cardiovascular research (13.06.2023)
Published in Cardiovascular research (13.06.2023)
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Journal Article
Matching single cells across modalities with contrastive learning and optimal transport
Gossi, Federico, Pati, Pushpak, Chouvardas, Panagiotis, Martinelli, Adriano Luca, Kruithof-de Julio, Marianna, Rapsomaniki, Maria Anna
Published in Briefings in bioinformatics (19.05.2023)
Published in Briefings in bioinformatics (19.05.2023)
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Journal Article
Assessment of the Cardiac Noncoding Transcriptome by Single-Cell RNA Sequencing Identifies FIXER, a Conserved Profibrogenic Long Noncoding RNA
Aghagolzadeh, Parisa, Plaisance, Isabelle, Bernasconi, Riccardo, Treibel, Thomas A., Quetglas, Carlos Pulido, Wyss, Tania, Wigger, Leonore, Nemir, Mohamed, Sarre, Alexandre, Chouvardas, Panagiotis, Johnson, Rory, González, Arantxa, Pedrazzini, Thierry
Published in Circulation (New York, N.Y.) (29.08.2023)
Published in Circulation (New York, N.Y.) (29.08.2023)
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Journal Article
Single-cell analysis of the long noncoding RNA transcriptome in cardiac fibroblasts identifies FIXER, a novel therapeutic target for fibrosis in the damaged heart
Aghagolzadeh, Parisa, Plaisance, Isabelle, Bernasconi, Riccardo, Sarre, Alexandre, Nemir, Mohamed, Quetglas, Carlos Pulido, Chouvardas, Panagiotis, Johnson, Rory, Miqueo, Arantxa González, Pedrazzini, Thierry
Published in Journal of molecular and cellular cardiology (31.12.2022)
Published in Journal of molecular and cellular cardiology (31.12.2022)
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Journal Article
Alternative splicing of a transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification
Plaisance, Isabelle, Chouvardas, Panagiotis, Sun, Yuliangzi, Nemir, Mohamed, Aghagolzadeh, Parisa, Aminfar, Farhang, Shen, Sophie, Shim, Woo Jun, Rochais, Francesca, Johnson, Rory, Pedrazzini, Thierry
Published in Journal of molecular and cellular cardiology (01.12.2022)
Published in Journal of molecular and cellular cardiology (01.12.2022)
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Journal Article