Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies
Bashor, Caleb J, Patel, Nikit, Choubey, Sandeep, Beyzavi, Ali, Kondev, Jané, Collins, James J, Khalil, Ahmad S
Published in Science (American Association for the Advancement of Science) (10.05.2019)
Published in Science (American Association for the Advancement of Science) (10.05.2019)
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Journal Article
Sequence-dependent surface condensation of a pioneer transcription factor on DNA
Morin, Jose A., Wittmann, Sina, Choubey, Sandeep, Klosin, Adam, Golfier, Stefan, Hyman, Anthony A., Jülicher, Frank, Grill, Stephan W.
Published in Nature physics (01.03.2022)
Published in Nature physics (01.03.2022)
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Journal Article
Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules
Choubey, Sandeep, Kondev, Jane, Sanchez, Alvaro
Published in PLoS computational biology (01.11.2015)
Published in PLoS computational biology (01.11.2015)
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Journal Article
Effect of transcription factor resource sharing on gene expression noise
Das, Dipjyoti, Dey, Supravat, Brewster, Robert C, Choubey, Sandeep
Published in PLoS computational biology (01.04.2017)
Published in PLoS computational biology (01.04.2017)
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Journal Article
Inherent regulatory asymmetry emanating from network architecture in a prevalent autoregulatory motif
Ali, Md Zulfikar, Parisutham, Vinuselvi, Choubey, Sandeep, Brewster, Robert C
Published in eLife (18.08.2020)
Published in eLife (18.08.2020)
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Journal Article
Efficacy of information transmission in cellular communication
Sarkar, Sumantra, Ali, Md Zulfikar, Choubey, Sandeep
Published in Physical review research (09.02.2023)
Published in Physical review research (09.02.2023)
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Journal Article
Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states
Jang, Sumin, Choubey, Sandeep, Furchtgott, Leon, Zou, Ling-Nan, Doyle, Adele, Menon, Vilas, Loew, Ethan B, Krostag, Anne-Rachel, Martinez, Refugio A, Madisen, Linda, Levi, Boaz P, Ramanathan, Sharad
Published in eLife (15.03.2017)
Published in eLife (15.03.2017)
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Journal Article
Role of protein-protein interactions on organization and dynamics of a model chromatin
Swain, Pinaki, Choubey, Sandeep, Vemparala, Satyavani
Published in The Journal of chemical physics (07.10.2024)
Published in The Journal of chemical physics (07.10.2024)
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Journal Article
Regulation of noise in gene expression
Sanchez, Alvaro, Choubey, Sandeep, Kondev, Jane
Published in Annual review of biophysics (01.01.2013)
Published in Annual review of biophysics (01.01.2013)
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Journal Article
Stochastic models of transcription: From single molecules to single cells
Sanchez, Alvaro, Choubey, Sandeep, Kondev, Jane
Published in Methods (San Diego, Calif.) (15.07.2013)
Published in Methods (San Diego, Calif.) (15.07.2013)
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Journal Article
Probing Mechanisms of Transcription Elongation Through Cell-to-Cell Variability of RNA Polymerase
Ali, Md Zulfikar, Choubey, Sandeep, Das, Dipjyoti, Brewster, Robert C.
Published in Biophysical journal (07.04.2020)
Published in Biophysical journal (07.04.2020)
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Journal Article
Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules: e1004345
Choubey, Sandeep, Kondev, Jane, Sanchez, Alvaro
Published in PLoS computational biology (01.11.2015)
Published in PLoS computational biology (01.11.2015)
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