Prediction of histone post-translational modification patterns based on nascent transcription data
Wang, Zhong, Chivu, Alexandra G., Choate, Lauren A., Rice, Edward J., Miller, Donald C., Chu, Tinyi, Chou, Shao-Pei, Kingsley, Nicole B., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., Antczak, Douglas F., Lis, John T., Danko, Charles G.
Published in Nature genetics (01.03.2022)
Published in Nature genetics (01.03.2022)
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Journal Article
Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
Blumberg, Amit, Zhao, Yixin, Huang, Yi-Fei, Dukler, Noah, Rice, Edward J, Chivu, Alexandra G, Krumholz, Katie, Danko, Charles G, Siepel, Adam
Published in BMC biology (15.02.2021)
Published in BMC biology (15.02.2021)
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Journal Article
Cohesin couples transcriptional bursting probabilities of inducible enhancers and promoters
Robles-Rebollo, Irene, Cuartero, Sergi, Canellas-Socias, Adria, Wells, Sarah, Karimi, Mohammad M., Mereu, Elisabetta, Chivu, Alexandra G., Heyn, Holger, Whilding, Chad, Dormann, Dirk, Marguerat, Samuel, Rioja, Inmaculada, Prinjha, Rab K., Stumpf, Michael P. H., Fisher, Amanda G., Merkenschlager, Matthias
Published in Nature communications (27.07.2022)
Published in Nature communications (27.07.2022)
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SETD2 Haploinsufficiency Enhances Germinal Center-Associated AICDA Somatic Hypermutation to Drive B-cell Lymphomagenesis
Leung, Wilfred, Teater, Matt, Durmaz, Ceyda, Meydan, Cem, Chivu, Alexandra G, Chadburn, Amy, Rice, Edward J, Muley, Ashlesha, Camarillo, Jeannie M, Arivalagan, Jaison, Li, Ziyi, Flowers, Christopher R, Kelleher, Neil L, Danko, Charles G, Imielinski, Marcin, Dave, Sandeep S, Armstrong, Scott A, Mason, Christopher E, Melnick, Ari M
Published in Cancer discovery (06.07.2022)
Published in Cancer discovery (06.07.2022)
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Journal Article
RNA polymerase II dynamics shape enhancer–promoter interactions
Barshad, Gilad, Lewis, James J., Chivu, Alexandra G., Abuhashem, Abderhman, Krietenstein, Nils, Rice, Edward J., Ma, Yitian, Wang, Zhong, Rando, Oliver J., Hadjantonakis, Anna-Katerina, Danko, Charles G.
Published in Nature genetics (01.08.2023)
Published in Nature genetics (01.08.2023)
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Journal Article
Evolution of promoter-proximal pausing enabled a new layer of transcription control
Chivu, Alexandra G, Abuhashem, Abderhman, Barshad, Gilad, Rice, Edward J, Leger, Michelle M, Vill, Albert C, Wong, Wilfred, Brady, Rebecca, Smith, Jeramiah J, Wikramanayake, Athula H, Arenas-Mena, César, Brito, Ilana L, Ruiz-Trillo, Iñaki, Hadjantonakis, Anna-Katerina, Lis, John T, Lewis, James J, Danko, Charles G
Published in Research square (24.03.2023)
Published in Research square (24.03.2023)
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Journal Article
Evolution of promoter-proximal pausing enabled a new layer of transcription control
Chivu, Alexandra G, Abuhashem, Abderhman, Barshad, Gilad, Rice, Edward J, Leger, Michelle M, Vill, Albert C, Wong, Wilfred, Brady, Rebecca, Smith, Jeramiah, Wikramanayake, Athula, Arenas-Mena, Cesar, Brito, Ilana L, Ruiz-Trillo, Inaki, Anna-Katerina Hadjantonakis, Lis, John, Lewis, James J, Danko, Charles G
Published in bioRxiv (19.02.2023)
Published in bioRxiv (19.02.2023)
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Accurate imputation of histone modifications using transcription
Wang, Zhong, Chivu, Alexandra G, Choate, Lauren A, Rice, Edward J, Miller, Donald C, Chu, Tinyi, Shao-Pei Chou, Kingsley, Nicole B, Peterson, Jessica L, Finno, Carrie J, Bellone, Rebecca R, Antczak, Douglas F, Danko, Charles G
Published in bioRxiv (09.04.2020)
Published in bioRxiv (09.04.2020)
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