Molecular dynamics of α-helix inside a protein with single helix
Chirgadze, Y N, Likhachev, I V, Balabaev, N K, Brazhnikov, E V
Published in Journal of biomolecular structure & dynamics (30.01.2024)
Published in Journal of biomolecular structure & dynamics (30.01.2024)
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Viracept (Nelfinavir Mesylate, AG1343): A Potent, Orally Bioavailable Inhibitor of HIV-1 Protease
Kaldor, Stephen W, Kalish, Vincent J, Davies, Jay F, Shetty, Bhasker V, Fritz, James E, Appelt, Krzysztof, Burgess, Jeffrey A, Campanale, Kristina M, Chirgadze, Nickolay Y, Clawson, David K, Dressman, Bruce A, Hatch, Steven D, Khalil, Deborah A, Kosa, Maha B, Lubbehusen, Penny P, Muesing, Mark A, Patick, Amy K, Reich, Siegfried H, Su, Kenneth S, Tatlock, John H
Published in Journal of medicinal chemistry (21.11.1997)
Published in Journal of medicinal chemistry (21.11.1997)
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Molecular dynamics of α-helical structure: poly-l-glutamic acid
Chirgadze, Y N, Likhachev, I V, Balabaev, N K, Brazhnikov, E V
Published in Journal of biomolecular structure & dynamics (2023)
Published in Journal of biomolecular structure & dynamics (2023)
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Crystal structure of Streptococcus pneumoniae acyl carrier protein synthase: an essential enzyme in bacterial fatty acid biosynthesis
Chirgadze, Nickolay Y., Briggs, Steven L., McAllister, Kelly A., Fischl, Anthony S., Zhao, Genshi
Published in The EMBO journal (16.10.2000)
Published in The EMBO journal (16.10.2000)
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The electrostatic role of the Zn-Cys2His2 complex in binding of operator DNA with transcription factors: mouse EGR-1 from the Cys2His2 family
Chirgadze, Y.N., Boshkova, E.A., Polozov, R.V., Sivozhelezov, V.S., Dzyabchenko, A.V., Kuzminsky, M.B., Stepanenko, V.A., Ivanov, V.V.
Published in Journal of biomolecular structure & dynamics (18.11.2018)
Published in Journal of biomolecular structure & dynamics (18.11.2018)
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Structure-Based Design of Potent, Amidine-Derived Inhibitors of Factor Xa: Evaluation of Selectivity, Anticoagulant Activity, and Antithrombotic Activity
Wiley, Michael R, Weir, Leonard C, Briggs, Steven, Bryan, Nancy A, Buben, John, Campbell, Charles, Chirgadze, Nickolay Y, Conrad, Richard C, Craft, Trelia J, Ficorilli, James V, Franciskovich, Jeffry B, Froelich, Larry L, Gifford-Moore, Donetta S, Goodson, Theodore, Herron, David K, Klimkowski, Valentine J, Kurz, Kenneth D, Kyle, Jeffery A, Masters, John J, Ratz, Andrew M, Milot, Guy, Shuman, Robert T, Smith, Tommy, Smith, Gerald F, Tebbe, Ann Louise, Tinsley, Jennifer M, Towner, Richard D, Wilson, Alexander, Yee, Ying K
Published in Journal of medicinal chemistry (09.03.2000)
Published in Journal of medicinal chemistry (09.03.2000)
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Dibasic Benzo[b]thiophene Derivatives as a Novel Class of Active Site-Directed Thrombin Inhibitors. 1. Determination of the Serine Protease Selectivity, Structure−Activity Relationships, and Binding Orientation
Sall, Daniel J, Bastian, Jolie A, Briggs, Stephen L, Buben, John A, Chirgadze, Nickolay Y, Clawson, David K, Denney, Michael L, Giera, Deborah D, Gifford-Moore, Donetta S, Harper, Richard W, Hauser, Kenneth L, Klimkowski, Valentine J, Kohn, Todd J, Lin, Ho-Shen, McCowan, Jefferson R, Palkowitz, Alan D, Smith, Gerald F, Takeuchi, Kumiko, Thrasher, Kenneth J, Tinsley, Jennifer M, Utterback, Barbara G, Yan, Sau-Chi B, Zhang, Minsheng
Published in Journal of medicinal chemistry (24.10.1997)
Published in Journal of medicinal chemistry (24.10.1997)
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Diamino Benzo[b]thiophene Derivatives as a Novel Class of Active Site Directed Thrombin Inhibitors. 5. Potency, Efficacy, and Pharmacokinetic Properties of Modified C-3 Side Chain Derivatives
Sall, Daniel J, Bailey, Dianna L, Bastian, Jolie A, Buben, John A, Chirgadze, Nickolay Y, Clemens-Smith, Amy C, Denney, Michael L, Fisher, Matthew J, Giera, Deborah D, Gifford-Moore, Donetta S, Harper, Richard W, Johnson, Lea M, Klimkowski, Valentine J, Kohn, Todd J, Lin, Ho-Shen, McCowan, Jefferson R, Palkowitz, Alan D, Richett, Michael E, Smith, Gerald F, Snyder, David W, Takeuchi, Kumiko, Toth, John E, Zhang, Minsheng
Published in Journal of medicinal chemistry (24.02.2000)
Published in Journal of medicinal chemistry (24.02.2000)
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Crystal structure of the CN-hydrolase SA0302 from the pathogenic bacterium Staphylococcus aureus belonging to the Nit and NitFhit Branch of the nitrilase superfamily
Gordon, Roni D., Qiu, Wei, Romanov, Vladimir, Lam, Kim, Soloveychik, Maria, Benetteraj, Diana, Battaile, Kevin P., Chirgadze, Yuri N., Pai, Emil F., Chirgadze, Nickolay Y.
Published in Journal of biomolecular structure & dynamics (01.10.2013)
Published in Journal of biomolecular structure & dynamics (01.10.2013)
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The crystal structures of human α-thrombin complexed with active site-directed diamino benzo[b]thiophene derivatives: A binding mode for a structurally novel class of inhibitors
CHIRGADZE, N.Y., SALL, D.J., BRIGGS, S.L., CLAWSON, D.K., ZHANG, M., SMITH, G.F., SCHEVITZ, R.W.
Published in Protein science (01.01.2000)
Published in Protein science (01.01.2000)
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The design of potent, selective, non-covalent, peptide thrombin inhibitors utilizing imidazole as a S1 binding element
Wiley, Michael R., Weir, Leonard C., Briggs, Steven L., Chirgadze, Nickolay Y., Clawson, David, Gifford-Moore, Donetta S., Schacht, Aaron L., Smith, Gerald F., Vasudevan, Vasu, Zornes, Larry L., Klimkowski, Valentine J.
Published in Bioorganic & medicinal chemistry letters (20.09.1999)
Published in Bioorganic & medicinal chemistry letters (20.09.1999)
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The crystal structure of human α‐thrombin complexed with LY178550, a nonpeptidyl, active site‐directed inhibitor
Chirgadze, Nickolay Y., Sall, Daniel J., Klimkowski, Valentine J., Clawson, David K., Briggs, Steve L., Hermann, Robert, Smith, Gerald F., Gifford‐Moore, Donetta S., Wery, Jean‐Pierre
Published in Protein science (01.07.1997)
Published in Protein science (01.07.1997)
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Dibasic benzo[ b]thiophene derivatives as a novel class of active site directed thrombin inhibitors. 2. Exploring interactions at the proximal (S 2) binding site
Sall, Daniel J., Briggs, Stephen L., Chirgadze, Nickolay Y., Clawson, David K., Gifford-Moore, Donetta S., Klimkowski, Valentine J., McCowan, Jefferson R., Smith, Gerald F., Wikel, James H.
Published in Bioorganic & medicinal chemistry letters (22.09.1998)
Published in Bioorganic & medicinal chemistry letters (22.09.1998)
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Dibasic benzo[ b]thiophene derivatives as a novel class of active site directed thrombin inhibitors: 2: sidechain optimization and demonstration of in vivo efficacy
Zhang, Minsheng, Bailey, Dianna L., Bastian, Jolie A., Briggs, Stephen L., Chirgadze, Nickolay Y., Clawson, David K., Denney, Michael L., Gifford-Moore, Donetta S., Harper, Richard W., Johnson, Lea M., Klimkowski, Valentine J., Kohn, Todd J., Lin, Ho-Shen, McCowan, Jefferson R., Richett, Michael E., Sall, Daniel J., Smith, Amy J., Smith, Gerald F., Snyder, David W., Takeuchi, Kumiko, Utterback, Barbara G., Yan, Sau-Chi B.
Published in Bioorganic & medicinal chemistry letters (08.03.1999)
Published in Bioorganic & medicinal chemistry letters (08.03.1999)
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Surface interactions of gamma-crystallins in the crystal medium in relation to their association in the eye lens
Sergeev, Y V, Chirgadze, Y N, Mylvaganam, S E, Driessen, H, Slingsby, C, Blundell, T L
Published in Proteins, structure, function, and bioinformatics (1988)
Published in Proteins, structure, function, and bioinformatics (1988)
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Indole Inhibitors of Human Nonpancreatic Secretory Phospholipase A2. 1. Indole-3-acetamides
Dillard, Robert D., Bach, Nicholas J., Draheim, Susan E., Berry, Dennis R., Carlson, Donald G., Chirgadze, Nickolay Y., Clawson, David K., Hartley, Lawrence W., Johnson, Lea M., Jones, Noel D., McKinney, Emma R., Mihelich, Edward D., Olkowski, Jennifer L., Schevitz, Richard W., Smith, Amy C., Snyder, David W., Sommers, Cynthia D., Wery, Jean-Pierre
Published in Journal of medicinal chemistry (20.12.1996)
Published in Journal of medicinal chemistry (20.12.1996)
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