Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform
Li, Po-E, Lo, Chien-Chi, Anderson, Joseph J, Davenport, Karen W, Bishop-Lilly, Kimberly A, Xu, Yan, Ahmed, Sanaa, Feng, Shihai, Mokashi, Vishwesh P, Chain, Patrick S G
Published in Nucleic acids research (09.01.2017)
Published in Nucleic acids research (09.01.2017)
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Journal Article
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia
Martinez-Garcia, Manuel, Brazel, David M, Swan, Brandon K, Arnosti, Carol, Chain, Patrick S G, Reitenga, Krista G, Xie, Gary, Poulton, Nicole J, Lluesma Gomez, Monica, Masland, Dashiell E D, Thompson, Brian, Bellows, Wendy K, Ziervogel, Kai, Lo, Chien-Chi, Ahmed, Sanaa, Gleasner, Cheryl D, Detter, Chris J, Stepanauskas, Ramunas
Published in PloS one (20.04.2012)
Published in PloS one (20.04.2012)
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Journal Article
Saliva microbiomes distinguish caries-active from healthy human populations
Yang, Fang, Zeng, Xiaowei, Ning, Kang, Liu, Kuan-Liang, Lo, Chien-Chi, Wang, Wei, Chen, Jie, Wang, Dongmei, Huang, Ranran, Chang, Xingzhi, Chain, Patrick S, Xie, Gary, Ling, Junqi, Xu, Jian
Published in The ISME Journal (01.01.2012)
Published in The ISME Journal (01.01.2012)
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Journal Article
programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
Leung, Kaston, Zahn, Hans, Leaver, Timothy, Konwar, Kishori M, Hanson, Niels W, Pagé, Antoine P, Lo, Chien-Chi, Chain, Patrick S, Hallam, Steven J, Hansen, Carl L
Published in Proceedings of the National Academy of Sciences - PNAS (15.05.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (15.05.2012)
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Journal Article
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
Dodsworth, Jeremy A, Blainey, Paul C, Murugapiran, Senthil K, Swingley, Wesley D, Ross, Christian A, Tringe, Susannah G, Chain, Patrick S G, Scholz, Matthew B, Lo, Chien-Chi, Raymond, Jason, Quake, Stephen R, Hedlund, Brian P
Published in Nature communications (2013)
Published in Nature communications (2013)
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Journal Article
The National Microbiome Data Collaborative: enabling microbiome science
Wood-Charlson, Elisha M, Anubhav, Auberry, Deanna, Blanco, Hannah, Borkum, Mark I, Corilo, Yuri E, Davenport, Karen W, Deshpande, Shweta, Devarakonda, Ranjeet, Drake, Meghan, Duncan, William D, Flynn, Mark C, Hays, David, Hu, Bin, Huntemann, Marcel, Li, Po-E, Lipton, Mary, Lo, Chien-Chi, Millard, David, Miller, Kayd, Piehowski, Paul D, Purvine, Samuel, Reddy, T B K, Shakya, Migun, Sundaramurthi, Jagadish Chandrabose, Vangay, Pajau, Wei, Yaxing, Wilson, Bruce E, Canon, Shane, Chain, Patrick S G, Fagnan, Kjiersten, Martin, Stanton, McCue, Lee Ann, Mungall, Christopher J, Mouncey, Nigel J, Maxon, Mary E, Eloe-Fadrosh, Emiley A
Published in Nature reviews. Microbiology (01.06.2020)
Published in Nature reviews. Microbiology (01.06.2020)
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Journal Article
Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing
Fischer, Will, Ganusov, Vitaly V, Giorgi, Elena E, Hraber, Peter T, Keele, Brandon F, Leitner, Thomas, Han, Cliff S, Gleasner, Cheryl D, Green, Lance, Lo, Chien-Chi, Nag, Ambarish, Wallstrom, Timothy C, Wang, Shuyi, McMichael, Andrew J, Haynes, Barton F, Hahn, Beatrice H, Perelson, Alan S, Borrow, Persephone, Shaw, George M, Bhattacharya, Tanmoy, Korber, Bette T
Published in PloS one (20.08.2010)
Published in PloS one (20.08.2010)
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Journal Article
Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo
Tsibris, Athe M N, Korber, Bette, Arnaout, Ramy, Russ, Carsten, Lo, Chien-Chi, Leitner, Thomas, Gaschen, Brian, Theiler, James, Paredes, Roger, Su, Zhaohui, Hughes, Michael D, Gulick, Roy M, Greaves, Wayne, Coakley, Eoin, Flexner, Charles, Nusbaum, Chad, Kuritzkes, Daniel R
Published in PloS one (25.05.2009)
Published in PloS one (25.05.2009)
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Journal Article
Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach
Gontang, Erin A, Aylward, Frank O, Carlos, Camila, Glavina Del Rio, Tijana, Chovatia, Mansi, Fern, Alison, Lo, Chien-Chi, Malfatti, Stephanie A, Tringe, Susannah G, Currie, Cameron R, Kolter, Roberto
Published in PloS one (18.05.2017)
Published in PloS one (18.05.2017)
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Journal Article
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows
Connor, Ryan, Shakya, Migun, Yarmosh, David A, Maier, Wolfgang, Martin, Ross, Bradford, Rebecca, Brister, J Rodney, Chain, Patrick S G, Copeland, Courtney A, di Iulio, Julia, Hu, Bin, Ebert, Philip, Gunti, Jonathan, Jin, Yumi, Katz, Kenneth S, Kochergin, Andrey, LaRosa, Tré, Li, Jiani, Li, Po-E, Lo, Chien-Chi, Rashid, Sujatha, Maiorova, Evguenia S, Xiao, Chunlin, Zalunin, Vadim, Purcell, Lisa, Pruitt, Kim D
Published in Viruses (01.03.2024)
Published in Viruses (01.03.2024)
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Journal Article
Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago , Antarctica
Murray, Alison E, Avalon, Nicole E, Bishop, Lucas, Davenport, Karen W, Delage, Erwan, Dichosa, Armand E K, Eveillard, Damien, Higham, Mary L, Kokkaliari, Sofia, Lo, Chien-Chi, Riesenfeld, Christian S, Young, Ryan M, Chain, Patrick S G, Baker, Bill J
Published in Marine drugs (02.06.2020)
Published in Marine drugs (02.06.2020)
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Journal Article
Cohesion Group Approach for Evolutionary Analysis of Aspartokinase, an Enzyme That Feeds a Branched Network of Many Biochemical Pathways
Lo, Chien-Chi, Bonner, Carol A, Xie, Gary, D'Souza, Mark, Jensen, Roy A
Published in Microbiology and Molecular Biology Reviews (01.12.2009)
Published in Microbiology and Molecular Biology Reviews (01.12.2009)
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