Studying clonal dynamics in response to cancer therapy using high-complexity barcoding
Bhang, Hyo-eun C, Ruddy, David A, Krishnamurthy Radhakrishna, Viveksagar, Caushi, Justina X, Zhao, Rui, Hims, Matthew M, Singh, Angad P, Kao, Iris, Rakiec, Daniel, Shaw, Pamela, Balak, Marissa, Raza, Alina, Ackley, Elizabeth, Keen, Nicholas, Schlabach, Michael R, Palmer, Michael, Leary, Rebecca J, Chiang, Derek Y, Sellers, William R, Michor, Franziska, Cooke, Vesselina G, Korn, Joshua M, Stegmeier, Frank
Published in Nature medicine (01.05.2015)
Published in Nature medicine (01.05.2015)
Get full text
Journal Article
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
Wang, Kai, Singh, Darshan, Zeng, Zheng, Coleman, Stephen J, Huang, Yan, Savich, Gleb L, He, Xiaping, Mieczkowski, Piotr, Grimm, Sara A, Perou, Charles M, MacLeod, James N, Chiang, Derek Y, Prins, Jan F, Liu, Jinze
Published in Nucleic acids research (01.10.2010)
Published in Nucleic acids research (01.10.2010)
Get full text
Journal Article
Parallel single-cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment
Kang, Boxi, Camps, Jordi, Fan, Biao, Jiang, Hongpeng, Ibrahim, Mahmoud M, Hu, Xueda, Qin, Shishang, Kirchhoff, Dennis, Chiang, Derek Y, Wang, Shan, Ye, Yingjiang, Shen, Zhanlong, Bu, Zhaode, Zhang, Zemin, Roider, Helge G
Published in Genome Biology (22.12.2022)
Published in Genome Biology (22.12.2022)
Get full text
Journal Article
Integrative Transcriptome Analysis Reveals Common Molecular Subclasses of Human Hepatocellular Carcinoma
HOSHIDA, Yujin, NIJMAN, Sebastian M. B, WATANABE, Goro, GABRIEL, Stacey, FRIEDMAN, Scott L, KUMADA, Hiromitsu, LLOVET, Josep M, GOLUB, Todd R, KOBAYASHI, Masahiro, CHAN, Jennifer A, BRUNET, Jean-Philippe, CHIANG, Derek Y, VILLANUEVA, Augusto, NEWELL, Philippa, IKEDA, Kenji, HASHIMOTO, Masaji
Published in Cancer research (Chicago, Ill.) (15.09.2009)
Published in Cancer research (Chicago, Ill.) (15.09.2009)
Get full text
Journal Article
Gene Expression in Fixed Tissues and Outcome in Hepatocellular Carcinoma
Hoshida, Yujin, Villanueva, Augusto, Kobayashi, Masahiro, Peix, Judit, Chiang, Derek Y, Camargo, Amy, Gupta, Supriya, Moore, Jamie, Wrobel, Matthew J, Lerner, Jim, Reich, Michael, Chan, Jennifer A, Glickman, Jonathan N, Ikeda, Kenji, Hashimoto, Masaji, Watanabe, Goro, Daidone, Maria G, Roayaie, Sasan, Schwartz, Myron, Thung, Swan, Salvesen, Helga B, Gabriel, Stacey, Mazzaferro, Vincenzo, Bruix, Jordi, Friedman, Scott L, Kumada, Hiromitsu, Llovet, Josep M, Golub, Todd R
Published in The New England journal of medicine (06.11.2008)
Published in The New England journal of medicine (06.11.2008)
Get full text
Journal Article
ILT3 (LILRB4) Promotes the Immunosuppressive Function of Tumor-Educated Human Monocytic Myeloid-Derived Suppressor Cells
Singh, Latika, Muise, Eric S, Bhattacharya, Anannya, Grein, Jeff, Javaid, Sarah, Stivers, Peter, Zhang, Jun, Qu, Yujie, Joyce-Shaikh, Barbara, Loboda, Andrey, Zhang, Chunsheng, Meehl, Michael, Chiang, Derek Y, Ranganath, Sheila H, Rosenzweig, Michael, Brandish, Philip E
Published in Molecular cancer research (01.04.2021)
Published in Molecular cancer research (01.04.2021)
Get full text
Journal Article
Genomic Analysis of Nasopharyngeal Carcinoma Reveals TME-Based Subtypes
Zhang, Li, MacIsaac, Kenzie D, Zhou, Ting, Huang, Pei-Yu, Xin, Chunlin, Dobson, Jason R, Yu, Kun, Chiang, Derek Y, Fan, Yue, Pelletier, Marc, Wang, Yan, Jaeger, Savina, Krishnamurthy Radhakrishnan, Viveksagar, JeBailey, Lellean, Skewes-Cox, Peter, Zhang, Jing, Fang, Wenfeng, Huang, Yan, Zhao, Hongyun, Zhao, Yuanyuan, Li, En, Peng, Bin, Huang, Alan, Dranoff, Glenn, Hammerman, Peter S, Engelman, Jeffrey, Bitter, Hans, Zeng, Yi-Xin, Yao, Yao
Published in Molecular cancer research (01.12.2017)
Published in Molecular cancer research (01.12.2017)
Get full text
Journal Article
Pivotal role of mTOR signaling in hepatocellular carcinoma
Villanueva, Augusto, Chiang, Derek Y, Newell, Pippa, Peix, Judit, Thung, Swan, Alsinet, Clara, Tovar, Victoria, Roayaie, Sasan, Minguez, Beatriz, Sole, Manel, Battiston, Carlo, Van Laarhoven, Stijn, Fiel, Maria I, Di Feo, Analisa, Hoshida, Yujin, Yea, Steven, Toffanin, Sara, Ramos, Alex, Martignetti, John A, Mazzaferro, Vincenzo, Bruix, Jordi, Waxman, Samuel, Schwartz, Myron, Meyerson, Matthew, Friedman, Scott L, Llovet, Josep M
Published in Gastroenterology (New York, N.Y. 1943) (01.12.2008)
Published in Gastroenterology (New York, N.Y. 1943) (01.12.2008)
Get more information
Journal Article
MicroRNA-Based Classification of Hepatocellular Carcinoma and Oncogenic Role of miR-517a
Toffanin, Sara, Hoshida, Yujin, Lachenmayer, Anja, Villanueva, Augusto, Cabellos, Laia, Minguez, Beatriz, Savic, Radoslav, Ward, Stephen C, Thung, Swan, Chiang, Derek Y, Alsinet, Clara, Tovar, Victoria, Roayaie, Sasan, Schwartz, Myron, Bruix, Jordi, Waxman, Samuel, Friedman, Scott L, Golub, Todd, Mazzaferro, Vincenzo, Llovet, Josep M
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2011)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2011)
Get full text
Journal Article
Focal gains of VEGFA and molecular classification of hepatocellular carcinoma
Chiang, Derek Y, Villanueva, Augusto, Hoshida, Yujin, Peix, Judit, Newell, Philippa, Minguez, Beatriz, LeBlanc, Amanda C, Donovan, Diana J, Thung, Swan N, Solé, Manel, Tovar, Victoria, Alsinet, Clara, Ramos, Alex H, Barretina, Jordi, Roayaie, Sasan, Schwartz, Myron, Waxman, Samuel, Bruix, Jordi, Mazzaferro, Vincenzo, Ligon, Azra H, Najfeld, Vesna, Friedman, Scott L, Sellers, William R, Meyerson, Matthew, Llovet, Josep M
Published in Cancer research (Chicago, Ill.) (15.08.2008)
Published in Cancer research (Chicago, Ill.) (15.08.2008)
Get full text
Journal Article
IGF activation in a molecular subclass of hepatocellular carcinoma and pre-clinical efficacy of IGF-1R blockage
Tovar, Victoria, Alsinet, Clara, Villanueva, Augusto, Hoshida, Yujin, Chiang, Derek Y, Solé, Manel, Thung, Swan, Moyano, Susana, Toffanin, Sara, Mínguez, Beatriz, Cabellos, Laia, Peix, Judit, Schwartz, Myron, Mazzaferro, Vincenzo, Bruix, Jordi, Llovet, Josep M
Published in Journal of hepatology (01.04.2010)
Published in Journal of hepatology (01.04.2010)
Get full text
Journal Article
Nuclear factor I/B is an oncogene in small cell lung cancer
Dooley, Alison L, Winslow, Monte M, Chiang, Derek Y, Banerji, Shantanu, Stransky, Nicolas, Dayton, Talya L, Snyder, Eric L, Senna, Stephanie, Whittaker, Charles A, Bronson, Roderick T, Crowley, Denise, Barretina, Jordi, Garraway, Levi, Meyerson, Matthew, Jacks, Tyler
Published in Genes & development (15.07.2011)
Published in Genes & development (15.07.2011)
Get full text
Journal Article
iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data
Mezlini, Aziz M, Smith, Eric J M, Fiume, Marc, Buske, Orion, Savich, Gleb L, Shah, Sohrab, Aparicio, Sam, Chiang, Derek Y, Goldenberg, Anna, Brudno, Michael
Published in Genome research (01.03.2013)
Published in Genome research (01.03.2013)
Get full text
Journal Article
Ras pathway activation in hepatocellular carcinoma and anti-tumoral effect of combined sorafenib and rapamycin in vivo
Newell, Pippa, Toffanin, Sara, Villanueva, Augusto, Chiang, Derek Y, Minguez, Beatriz, Cabellos, Laia, Savic, Radoslav, Hoshida, Yujin, Lim, Kiat Hon, Melgar-Lesmes, Pedro, Yea, Steven, Peix, Judit, Deniz, Kemal, Fiel, M. Isabel, Thung, Swan, Alsinet, Clara, Tovar, Victoria, Mazzaferro, Vincenzo, Bruix, Jordi, Roayaie, Sasan, Schwartz, Myron, Friedman, Scott L, Llovet, Josep M
Published in Journal of hepatology (01.10.2009)
Published in Journal of hepatology (01.10.2009)
Get full text
Journal Article
Conservation and evolution of cis-regulatory systems in ascomycete fungi
Gasch, Audrey P, Moses, Alan M, Chiang, Derek Y, Fraser, Hunter B, Berardini, Mark, Eisen, Michael B
Published in PLoS biology (01.12.2004)
Published in PLoS biology (01.12.2004)
Get full text
Journal Article
A probabilistic framework for aligning paired-end RNA-seq data
Hu, Yin, Wang, Kai, He, Xiaping, Chiang, Derek Y., Prins, Jan F., Liu, Jinze
Published in Bioinformatics (15.08.2010)
Published in Bioinformatics (15.08.2010)
Get full text
Journal Article
A community‐based lung cancer rapid tissue donation protocol provides high‐quality drug‐resistant specimens for proteogenomic analyses
Boyle, Theresa A., Quinn, Gwendolyn P., Schabath, Matthew B., Muñoz‐Antonia, Teresita, Saller, James J., Duarte, Luisa F., Hair, Laura S., Teer, Jamie K., Chiang, Derek Y., Leary, Rebecca, Wong, Connie C., Savchenko, Alexander, Singh, Angad P., Charette, LaSalette, Mendell, Kate, Gorgun, Gullu, Antonia, Scott J., Chiappori, Alberto A., Creelan, Benjamin C., Gray, Jhanelle E., Haura, Eric B.
Published in Cancer medicine (Malden, MA) (01.01.2020)
Published in Cancer medicine (Malden, MA) (01.01.2020)
Get full text
Journal Article
Position specific variation in the rate of evolution in transcription factor binding sites
Moses, Alan M, Chiang, Derek Y, Kellis, Manolis, Lander, Eric S, Eisen, Michael B
Published in BMC evolutionary biology (28.08.2003)
Published in BMC evolutionary biology (28.08.2003)
Get full text
Journal Article
Cancer gene discovery in hepatocellular carcinoma
Zender, Lars, Villanueva, Augusto, Tovar, Victoria, Sia, Daniela, Chiang, Derek Y, Llovet, Josep M
Published in Journal of hepatology (01.06.2010)
Published in Journal of hepatology (01.06.2010)
Get full text
Journal Article