GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
Boyle, Elizabeth I., Weng, Shuai, Gollub, Jeremy, Jin, Heng, Botstein, David, Cherry, J. Michael, Sherlock, Gavin
Published in Bioinformatics (12.12.2004)
Published in Bioinformatics (12.12.2004)
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The Gene Ontology (GO) database and informatics resource
Harris, M A, Clark, J, Ireland, A, Lomax, J, Ashburner, M, Foulger, R, Eilbeck, K, Lewis, S, Marshall, B, Mungall, C, Richter, J, Rubin, G M, Blake, J A, Bult, C, Dolan, M, Drabkin, H, Eppig, J T, Hill, D P, Ni, L, Ringwald, M, Balakrishnan, R, Cherry, J M, Christie, K R, Costanzo, M C, Dwight, S S, Engel, S, Fisk, D G, Hirschman, J E, Hong, E L, Nash, R S, Sethuraman, A, Theesfeld, C L, Botstein, D, Dolinski, K, Feierbach, B, Berardini, T, Mundodi, S, Rhee, S Y, Apweiler, R, Barrell, D, Camon, E, Dimmer, E, Lee, V, Chisholm, R, Gaudet, P, Kibbe, W, Kishore, R, Schwarz, E M, Sternberg, P, Gwinn, M, Hannick, L, Wortman, J, Berriman, M, Wood, V, de la Cruz, N, Tonellato, P, Jaiswal, P, Seigfried, T, White, R
Published in Nucleic acids research (01.01.2004)
Published in Nucleic acids research (01.01.2004)
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Gene Ontology: tool for the unification of biology
Botstein, David, Cherry, J. Michael, Ashburner, Michael, Ball, Catherine A, Blake, Judith A, Butler, Heather, Davis, Allan P, Dolinski, Kara, Dwight, Selina S, Eppig, Janan T, Harris, Midori A, Hill, David P, Issel-Tarver, Laurie, Kasarskis, Andrew, Lewis, Suzanna, Matese, John C, Richardson, Joel E, Ringwald, Martin, Rubin, Gerald M, Sherlock, Gavin
Published in Nature genetics (01.05.2000)
Published in Nature genetics (01.05.2000)
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The Genome Sequence of Drosophila melanogaster
Adams, Mark D., Celniker, Susan E., Evans, Cheryl A., Amanatides, Peter G., Scherer, Steven E., Hoskins, Roger A., Galle, Richard F., Wortman, Jennifer R., Chen, Lin X., Rogers, Yu-Hui C., Blazej, Robert G., Pfeiffer, Barret D., Wan, Kenneth H., Doyle, Clare, Baxter, Evan G., Helt, Gregg, Abril, Josep F., An, Hui-Jin, Baldwin, Danita, Ballew, Richard M., Basu, Anand, Bayraktaroglu, Leyla, Beasley, Ellen M., Beeson, Karen Y., Bolshakov, Slava, Borkova, Dana, Bouck, John, Brokstein, Peter, Burtis, Kenneth C., Butler, Heather, Cadieu, Edouard, Angela Center, Cherry, J. Michael, Cawley, Simon, Davies, Peter, de Pablos, Beatriz, Dodson, Kristina, Doup, Lisa E., Ferraz, Concepcion, Fleischmann, Wolfgang, Fosler, Carl, Gabrielian, Andrei E., Garg, Neha S., Glodek, Anna, Gong, Fangcheng, Guan, Ping, Harris, Michael, Houck, Jarrett, Hostin, Damon, Houston, Kathryn A., Howland, Timothy J., Jalali, Mena, Kalush, Francis, Ke, Zhaoxi, Ketchum, Karen A., Kimmel, Bruce E., Kodira, Chinnappa D., Kraft, Cheryl, Kravitz, Saul, Lai, Zhongwu, Lei, Yiding, Li, Zhenya, Liang, Yong, Lin, Xiaoying, Mattei, Bettina, McIntosh, Tina C., McPherson, Duncan, Milshina, Natalia V., Moy, Mee, Murphy, Lee, Muzny, Donna M., Nelson, David L., Nelson, David R., Nelson, Keith A., Nixon, Katherine, Pan, Sue, Pollard, John, Reinert, Knut, Skupski, Marian P., Spier, Eugene, Stapleton, Mark, Sun, Eric, Svirskas, Robert, Turner, Russell, Venter, Eli, Wang, Xin, Wang, Zhen-Yuan, Weissenbach, Jean, Yang, Song, Yao, Q. Alison, Ye, Jane, Zhan, Ming, Zheng, Liansheng, Zhong, Wenyan, Zhou, Xiaojun, Zhu, Shiaoping, Zhu, Xiaohong, Smith, Hamilton O., Gibbs, Richard A., Rubin, Gerald M.
Published in Science (American Association for the Advancement of Science) (24.03.2000)
Published in Science (American Association for the Advancement of Science) (24.03.2000)
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SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
Diehn, Maximilian, Sherlock, Gavin, Binkley, Gail, Jin, Heng, Matese, John C., Hernandez-Boussard, Tina, Rees, Christian A., Cherry, J. Michael, Botstein, David, Brown, Patrick O., Alizadeh, Ash A.
Published in Nucleic acids research (01.01.2003)
Published in Nucleic acids research (01.01.2003)
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Comparative Genomics of the Eukaryotes
Rubin, Gerald M., Yandell, Mark D., Wortman, Jennifer R., George L. Gabor Miklos, Nelson, Catherine R., Hariharan, Iswar K., Fortini, Mark E., Li, Peter W., Apweiler, Rolf, Fleischmann, Wolfgang, Cherry, J. Michael, Henikoff, Steven, Skupski, Marian P., Misra, Sima, Ashburner, Michael, Birney, Ewan, Boguski, Mark S., Brody, Thomas, Brokstein, Peter, Celniker, Susan E., Chervitz, Stephen A., Coates, David, Cravchik, Anibal, Gabrielian, Andrei, Galle, Richard F., Gelbart, William M., George, Reed A., Lawrence S. B. Goldstein, Gong, Fangcheng, Guan, Ping, Harris, Nomi L., Hay, Bruce A., Hoskins, Roger A., Li, Jiayin, Li, Zhenya, Hynes, Richard O., Jones, S. J. M., Kuehl, Peter M., Lemaitre, Bruno, Littleton, J. Troy, Morrison, Deborah K., Mungall, Chris, O'Farrell, Patrick H., Pickeral, Oxana K., Shue, Chris, Vosshall, Leslie B., Zhang, Jiong, Zhao, Qi, Zheng, Xiangqun H., Zhong, Fei, Zhong, Wenyan, Gibbs, Richard, Venter, J. Craig, Adams, Mark D., Lewis, Suzanna
Published in Science (American Association for the Advancement of Science) (24.03.2000)
Published in Science (American Association for the Advancement of Science) (24.03.2000)
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Providing Access to Genomic Variant Knowledge in a Healthcare Setting: A Vision for the ClinGen Electronic Health Records Workgroup
Overby, C L, Heale, B, Aronson, S, Cherry, J M, Dwight, S, Milosavljevic, A, Nelson, T, Niehaus, A, Weaver, M A, Ramos, E M, Williams, M S
Published in Clinical pharmacology and therapeutics (01.02.2016)
Published in Clinical pharmacology and therapeutics (01.02.2016)
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Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
Dwight, Selina S., Harris, Midori A., Dolinski, Kara, Ball, Catherine A., Binkley, Gail, Christie, Karen R., Fisk, Dianna G., Issel-Tarver, Laurie, Schroeder, Mark, Sherlock, Gavin, Sethuraman, Anand, Weng, Shuai, Botstein, David, Cherry, J. Michael
Published in Nucleic acids research (01.01.2002)
Published in Nucleic acids research (01.01.2002)
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Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
Christie, Karen R., Weng, Shuai, Balakrishnan, Rama, Costanzo, Maria C., Dolinski, Kara, Dwight, Selina S., Engel, Stacia R., Feierbach, Becket, Fisk, Dianna G., Hirschman, Jodi E., Hong, Eurie L., Issel‐Tarver, Laurie, Nash, Robert, Sethuraman, Anand, Starr, Barry, Theesfeld, Chandra L., Andrada, Rey, Binkley, Gail, Dong, Qing, Lane, Christopher, Schroeder, Mark, Botstein, David, Cherry, J. Michael
Published in Nucleic acids research (01.01.2004)
Published in Nucleic acids research (01.01.2004)
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Identification of Unstable Transcripts in Arabidopsis by cDNA Microarray Analysis: Rapid Decay Is Associated with a Group of Touch- and Specific Clock-Controlled Genes
Gutiérrez, Rodrigo A., Ewing, Rob M., Cherry, J. Michael, Green, Pamela J.
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (20.08.2002)
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The Stanford Microarray Database
Sherlock, G, Hernandez-Boussard, T, Kasarskis, A, Binkley, G, Matese, J C, Dwight, S S, Kaloper, M, Weng, S, Jin, H, Ball, C A, Eisen, M B, Spellman, P T, Brown, P O, Botstein, D, Cherry, J M
Published in Nucleic acids research (01.01.2001)
Published in Nucleic acids research (01.01.2001)
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PatMatch: a program for finding patterns in peptide and nucleotide sequences
Yan, Thomas, Yoo, Danny, Berardini, Tanya Z., Mueller, Lukas A., Weems, Dan C., Weng, Shuai, Cherry, J. Michael, Rhee, Seung Y.
Published in Nucleic acids research (01.07.2005)
Published in Nucleic acids research (01.07.2005)
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SGD: Saccharomyces Genome Database
Cherry, J.M, Adler, C, Ball, C, Chervitz, S.A, Dwight, S.S, Hester, E.T, Jia, Y, Juvik, G, Roe, T.Y, Schroeder, M
Published in Nucleic acids research (1998)
Published in Nucleic acids research (1998)
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Inference of Combinatorial Regulation in Yeast Transcriptional Networks: A Case Study of Sporulation
Wang, Wei, Cherry, J. Michael, Nochomovitz, Yigal, Jolly, Emmitt, Botstein, David, Li, Hao, Fields, Stanley
Published in Proceedings of the National Academy of Sciences - PNAS (08.02.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (08.02.2005)
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Expressions of hepatic genes, especially IGF-binding protein-1, correlating with serum corticosterone in microarray analysis
Cheng, RY, Birely, LA, Lum, NL, Perella, CM, Cherry, JM, Bhat, NK, Kasprzak, KS, Powell, DA, Alvord, WG, Anderson, LM
Published in Journal of molecular endocrinology (01.02.2004)
Published in Journal of molecular endocrinology (01.02.2004)
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Comparison of the Complete Protein Sets of Worm and Yeast: Orthology and Divergence
Chervitz, Stephen A., Aravind, L., Sherlock, Gavin, Ball, Catherine A., Koonin, Eugene V., Dwight, Selina S., Harris, Midori A., Dolinski, Kara, Mohr, Scott, Smith, Temple, Weng, Shuai, Cherry, J. Michael, Botstein, David
Published in Science (American Association for the Advancement of Science) (11.12.1998)
Published in Science (American Association for the Advancement of Science) (11.12.1998)
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Genetic and physical maps of Saccharomyces cerevisiae
Cherry, J.M, Ball, C, Weng, S, Juvik, G, Schmidt, R, Adler, C, Dunn, B, Dwight, S, Riles, L, Mortimer, R.K
Published in Nature (London) (29.05.1997)
Published in Nature (London) (29.05.1997)
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