Single-cell RNA sequencing reveals induction of distinct trained-immunity programs in human monocytes
Zhang, Bowen, Moorlag, Simone Jcfm, Dominguez-Andres, Jorge, Bulut, Özlem, Kilic, Gizem, Liu, Zhaoli, van Crevel, Reinout, Xu, Cheng-Jian, Joosten, Leo Ab, Netea, Mihai G, Li, Yang
Published in The Journal of clinical investigation (01.04.2022)
Published in The Journal of clinical investigation (01.04.2022)
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Integration of metabolomics, genomics, and immune phenotypes reveals the causal roles of metabolites in disease
Chu, Xiaojing, Jaeger, Martin, Beumer, Joep, Bakker, Olivier B, Aguirre-Gamboa, Raul, Oosting, Marije, Smeekens, Sanne P, Moorlag, Simone, Mourits, Vera P, Koeken, Valerie A C M, de Bree, Charlotte, Jansen, Trees, Mathews, Ian T, Dao, Khoi, Najhawan, Mahan, Watrous, Jeramie D, Joosten, Irma, Sharma, Sonia, Koenen, Hans J P M, Withoff, Sebo, Jonkers, Iris H, Netea-Maier, Romana T, Xavier, Ramnik J, Franke, Lude, Xu, Cheng-Jian, Joosten, Leo A B, Sanna, Serena, Jain, Mohit, Kumar, Vinod, Clevers, Hans, Wijmenga, Cisca, Netea, Mihai G, Li, Yang
Published in Genome Biology (06.07.2021)
Published in Genome Biology (06.07.2021)
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Cell‐type eQTL deconvolution of bronchial epithelium through integration of single‐cell and bulk RNA‐seq
Qi, Cancan, Berg, Marijn, Chu, Xiaojing, Timens, Wim, Kole, Tessa, Berge, Maarten, Xu, Cheng‐Jian, Koppelman, Gerard H., Nawijn, Martijn C., Li, Yang
Published in Allergy (Copenhagen) (01.12.2022)
Published in Allergy (Copenhagen) (01.12.2022)
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Epigenome-Wide DNA Methylation and Pesticide Use in the Agricultural Lung Health Study
Hoang, Thanh T, Qi, Cancan, Paul, Kimberly C, Lee, Mikyeong, White, Julie D, Richards, Marie, Auerbach, Scott S, Long, Stuart, Shrestha, Srishti, Wang, Tianyuan, Beane Freeman, Laura E, Hofmann, Jonathan N, Parks, Christine, Xu, Cheng-Jian, Ritz, Beate, Koppelman, Gerard H, London, Stephanie J
Published in Environmental health perspectives (01.09.2021)
Published in Environmental health perspectives (01.09.2021)
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Exposure to violence, chronic stress, nasal DNA methylation, and atopic asthma in children
Yan, Qi, Forno, Erick, Cardenas, Andres, Qi, Cancan, Han, Yueh‐Ying, Acosta‐Pérez, Edna, Kim, Soyeon, Zhang, Rong, Boutaoui, Nadia, Canino, Glorisa, Vonk, Judith M., Xu, Cheng‐jian, Chen, Wei, Marsland, Anna, Oken, Emily, Gold, Diane R., Koppelman, Gerard H., Celedón, Juan C.
Published in Pediatric pulmonology (01.07.2021)
Published in Pediatric pulmonology (01.07.2021)
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Infant RSV immunoprophylaxis changes nasal epithelial DNA methylation at 6 years of age
Xu, Cheng‐Jian, Scheltema, Nienke M., Qi, Cancan, Vedder, Rolf, Klein, Laura B. C., Nibbelke, Elisabeth E., Ent, Cornelis K., Bont, Louis J., Koppelman, Gerard H.
Published in Pediatric pulmonology (01.12.2021)
Published in Pediatric pulmonology (01.12.2021)
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No value of non‐selective beta‐blockers after TIPS‐insertion
Tiede, Anja, Stockhoff, Lena, Rieland, Hannah, Liu, Zhaoli, Mauz, Jim B., Tergast, Tammo L., Kabelitz, Martin A., Schütte, Sarah S., Ehrenbauer, Alena F., Meyer, Bernhard C., Wedemeyer, Heiner, Hinrichs, Jan B., Cornberg, Markus, Falk, Christine S., Xu, Cheng‐Jian, Maasoumy, Benjamin
Published in Alimentary pharmacology & therapeutics (01.10.2024)
Published in Alimentary pharmacology & therapeutics (01.10.2024)
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Genome-wide DNA methylation and long-term ambient air pollution exposure in Korean adults
Lee, Mi Kyeong, Xu, Cheng-Jian, Carnes, Megan U, Nichols, Cody E, Ward, James M, Kwon, Sung Ok, Kim, Sun-Young, Kim, Woo Jin, London, Stephanie J
Published in Clinical epigenetics (28.02.2019)
Published in Clinical epigenetics (28.02.2019)
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Multi-omics examination of Q fever fatigue syndrome identifies similarities with chronic fatigue syndrome
Raijmakers, Ruud P H, Roerink, Megan E, Jansen, Anne F M, Keijmel, Stephan P, Gacesa, Ranko, Li, Yang, Joosten, Leo A B, van der Meer, Jos W M, Netea, Mihai G, Bleeker-Rovers, Chantal P, Xu, Cheng-Jian
Published in Journal of translational medicine (26.11.2020)
Published in Journal of translational medicine (26.11.2020)
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IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis
Zhang, Zhenhua, Trypsteen, Wim, Blaauw, Marc, Chu, Xiaojing, Rutsaert, Sofie, Vandekerckhove, Linos, van der Heijden, Wouter, dos Santos, Jéssica Cristina, Xu, Cheng-Jian, Swertz, Morris A, van der Ven, Andre, Li, Yang
Published in BMC medicine (16.11.2021)
Published in BMC medicine (16.11.2021)
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Nasal DNA methylation at three CpG sites predicts childhood allergic disease
van Breugel, Merlijn, Qi, Cancan, Xu, Zhongli, Pedersen, Casper-Emil T., Petoukhov, Ilya, Vonk, Judith M., Gehring, Ulrike, Berg, Marijn, Bügel, Marnix, Carpaij, Orestes A., Forno, Erick, Morin, Andréanne, Eliasen, Anders U., Jiang, Yale, van den Berge, Maarten, Nawijn, Martijn C., Li, Yang, Chen, Wei, Bont, Louis J., Bønnelykke, Klaus, Celedón, Juan C., Koppelman, Gerard H., Xu, Cheng-Jian
Published in Nature communications (01.12.2022)
Published in Nature communications (01.12.2022)
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Evolution of cytokine production capacity in ancient and modern European populations
Domínguez-Andrés, Jorge, Kuijpers, Yunus, Bakker, Olivier B, Jaeger, Martin, Xu, Cheng-Jian, Van der Meer, Jos WM, Jakobsson, Mattias, Bertranpetit, Jaume, Joosten, Leo AB, Li, Yang, Netea, Mihai G
Published in eLife (07.09.2021)
Published in eLife (07.09.2021)
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Genome-wide analyses in Lyme borreliosis: identification of a genetic variant associated with disease susceptibility and its immunological implications
Vrijmoeth, Hedwig D, Ursinus, Jeanine, Botey-Bataller, Javier, Kuijpers, Yunus, Chu, Xiaojing, van de Schoor, Freek R, Scicluna, Brendon P, Xu, Cheng-Jian, Netea, Mihai G, Kullberg, Bart Jan, van den Wijngaard, Cees C, Li, Yang, Hovius, Joppe W, Joosten, Leo A B
Published in BMC infectious diseases (21.03.2024)
Published in BMC infectious diseases (21.03.2024)
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Plasma metabolome predicts trained immunity responses after antituberculosis BCG vaccination
Koeken, Valerie A. C. M, Qi, Cancan, Mourits, Vera P, de Bree, L. Charlotte J, Moorlag, Simone J. C. F. M, Sonawane, Vidhisha, Lemmers, Heidi, Dijkstra, Helga, Joosten, Leo A. B, van Laarhoven, Arjan, Xu, Cheng-Jian, van Crevel, Reinout, Netea, Mihai G, Li, Yang
Published in PLoS biology (12.09.2022)
Published in PLoS biology (12.09.2022)
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Soluble immune markers in the different phases of chronic hepatitis B virus infection
Wiegand, Steffen B., Beggel, Bastian, Wranke, Anika, Aliabadi, Elmira, Jaroszewicz, Jerzy, Xu, Cheng-Jian, Li, Yang, Manns, Michael P., Lengauer, Thomas, Wedemeyer, Heiner, Kraft, Anke R. M., Falk, Christine S., Cornberg, Markus
Published in Scientific reports (01.10.2019)
Published in Scientific reports (01.10.2019)
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A comprehensive genetic map of cytokine responses in Lyme borreliosis
Botey-Bataller, Javier, Vrijmoeth, Hedwig D., Ursinus, Jeanine, Kullberg, Bart-Jan, van den Wijngaard, Cees C., ter Hofstede, Hadewych, Alaswad, Ahmed, Gupta, Manoj K., Roesner, Lennart M., Huehn, Jochen, Werfel, Thomas, Schulz, Thomas F., Xu, Cheng-Jian, Netea, Mihai G., Hovius, Joppe W., Joosten, Leo A. B., Li, Yang
Published in Nature communications (07.05.2024)
Published in Nature communications (07.05.2024)
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A single-cell view on host immune transcriptional response to in vivo BCG-induced trained immunity
Li, Wenchao, Moorlag, Simone J.C.F.M., Koeken, Valerie A.C.M., Röring, Rutger J., de Bree, L. Charlotte J., Mourits, Vera P., Gupta, Manoj K., Zhang, Bowen, Fu, Jianbo, Zhang, Zhenhua, Grondman, Inge, van Meijgaarden, Krista E., Zhou, Liang, Alaswad, Ahmed, Joosten, Leo A.B., van Crevel, Reinout, Xu, Cheng-Jian, Netea, Mihai G., Li, Yang
Published in Cell reports (Cambridge) (30.05.2023)
Published in Cell reports (Cambridge) (30.05.2023)
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Residential PM2.5 exposure and the nasal methylome in children
Sordillo, Joanne E., Cardenas, Andres, Qi, Cancan, Rifas-Shiman, Sheryl L., Coull, Brent, Luttmann-Gibson, Heike, Schwartz, Joel, Kloog, Itai, Hivert, Marie-France, DeMeo, Dawn L., Baccarelli, Andrea A., Xu, Cheng-Jian, Gehring, Ulrike, Vonk, Judith M., Koppelman, Gerard, Oken, Emily, Gold, Diane R.
Published in Environment international (01.08.2021)
Published in Environment international (01.08.2021)
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