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Published in The Journal of clinical investigation (01.11.2023)
Published in The Journal of clinical investigation (01.11.2023)
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Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
Stevens, Michael, Cheng, Jeffrey B, Li, Daofeng, Xie, Mingchao, Hong, Chibo, Maire, Cécile L, Ligon, Keith L, Hirst, Martin, Marra, Marco A, Costello, Joseph F, Wang, Ting
Published in Genome research (01.09.2013)
Published in Genome research (01.09.2013)
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Genetic Evidence That the Human CYP2R1 Enzyme Is a Key Vitamin D 25-Hydroxylase
Cheng, Jeffrey B., Levine, Michael A., Bell, Norman H., Mangelsdorf, David J., Russell, David W., Wilson, Jean D.
Published in Proceedings of the National Academy of Sciences - PNAS (18.05.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (18.05.2004)
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Defining Patient-Level Molecular Heterogeneity in Psoriasis Vulgaris Based on Single-Cell Transcriptomics
Liu, Yale, Wang, Hao, Cook, Christopher, Taylor, Mark A., North, Jeffrey P., Hailer, Ashley, Shou, Yanhong, Sadik, Arsil, Kim, Esther, Purdom, Elizabeth, Cheng, Jeffrey B., Cho, Raymond J.
Published in Frontiers in immunology (26.07.2022)
Published in Frontiers in immunology (26.07.2022)
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Short cell cycle duration is a phenotype of human epidermal stem cells
Xiao, Tong, Eze, Ugomma C, Charruyer-Reinwald, Alex, Weisenberger, Tracy, Khalifa, Ayman, Abegaze, Brook, Schwab, Gabrielle K, Elsabagh, Rasha H, Parenteau, T Richard, Kochanowski, Karl, Piper, Merisa, Xia, Yumin, Cheng, Jeffrey B, Cho, Raymond J, Ghadially, Ruby
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Published in Stem cell research & therapy (13.03.2024)
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Isolation of human cutaneous immune cells for single-cell RNA sequencing
Hailer, Ashley A., Wu, David, El Kurdi, Abdullah, Yuan, Michelle, Cho, Raymond J., Cheng, Jeffrey B.
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Published in STAR protocols (16.06.2023)
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Regulatory network decoded from epigenomes of surface ectoderm-derived cell types
Lowdon, Rebecca F, Zhang, Bo, Bilenky, Misha, Mauro, Thea, Li, Daofeng, Gascard, Philippe, Sigaroudinia, Mahvash, Farnham, Peggy J, Bastian, Boris C, Tlsty, Thea D, Marra, Marco A, Hirst, Martin, Costello, Joseph F, Wang, Ting, Cheng, Jeffrey B
Published in Nature communications (25.11.2014)
Published in Nature communications (25.11.2014)
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Optimizing Single T-Cell Transcriptomic Discrimination of Atopic Dermatitis Versus Psoriasis Vulgaris
Taylor, Mark A., El Kurdi, Abdullah, Hailer, Ashley, Wang, Sijia, Yuan, Michelle, Mukhopadhyay, Sumanta, Bhutani, Tina, North, Jeffrey P., Cho, Raymond J., Cheng, Jeffrey B.
Published in Journal of investigative dermatology (01.04.2024)
Published in Journal of investigative dermatology (01.04.2024)
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Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
Stergachis, Andrew B., Neph, Shane, Reynolds, Alex, Humbert, Richard, Miller, Brady, Paige, Sharon L., Vernot, Benjamin, Cheng, Jeffrey B., Thurman, Robert E., Sandstrom, Richard, Haugen, Eric, Heimfeld, Shelly, Murry, Charles E., Akey, Joshua M., Stamatoyannopoulos, John A.
Published in Cell (15.08.2013)
Published in Cell (15.08.2013)
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Transcriptomics aids differentiation of IL-23 overactivity in a patient with atypical skin and joint disease
Hakimi, Marwa, North, Jeffrey P, Taylor, Mark A, Hailer, Ashley, Liu, Yale, Kim, Esther, Morehead, Kerstin, Shinkai, Kanade, Bhutani, Tina, Cheng, Jeffrey B, Cho, Raymond J
Published in The Lancet (British edition) (22.04.2023)
Published in The Lancet (British edition) (22.04.2023)
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Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation
Liu, Yale, Cook, Christopher, Sedgewick, Andrew J., Zhang, Shuyi, Fassett, Marlys S., Ricardo-Gonzalez, Roberto R., Harirchian, Paymann, Kashem, Sakeen W., Hanakawa, Sho, Leistico, Jacob R., North, Jeffrey P., Taylor, Mark A., Zhang, Wei, Man, Mao-Qiang, Charruyer, Alexandra, Beliakova-Bethell, Nadejda, Benz, Stephen C., Ghadially, Ruby, Mauro, Theodora M., Kaplan, Daniel H., Kabashima, Kenji, Choi, Jaehyuk, Song, Jun S., Cho, Raymond J., Cheng, Jeffrey B.
Published in iScience (23.10.2020)
Published in iScience (23.10.2020)
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Classification of human chronic inflammatory skin disease based on single-cell immune profiling
Liu, Yale, Wang, Hao, Taylor, Mark, Cook, Christopher, Martínez-Berdeja, Alejandra, North, Jeffrey P, Harirchian, Paymann, Hailer, Ashley A, Zhao, Zijun, Ghadially, Ruby, Ricardo-Gonzalez, Roberto R, Grekin, Roy C, Mauro, Theodora M, Kim, Esther, Choi, Jaehyuk, Purdom, Elizabeth, Cho, Raymond J, Cheng, Jeffrey B
Published in Science immunology (15.04.2022)
Published in Science immunology (15.04.2022)
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Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
Zhang, Bo, Zhou, Yan, Lin, Nan, Lowdon, Rebecca F, Hong, Chibo, Nagarajan, Raman P, Cheng, Jeffrey B, Li, Daofeng, Stevens, Michael, Lee, Hyung Joo, Xing, Xiaoyun, Zhou, Jia, Sundaram, Vasavi, Elliott, Ginell, Gu, Junchen, Shi, Taoping, Gascard, Philippe, Sigaroudinia, Mahvash, Tlsty, Thea D, Kadlecek, Theresa, Weiss, Arthur, O'Geen, Henriette, Farnham, Peggy J, Maire, Cécile L, Ligon, Keith L, Madden, Pamela A F, Tam, Angela, Moore, Richard, Hirst, Martin, Marra, Marco A, Zhang, Baoxue, Costello, Joseph F, Wang, Ting
Published in Genome research (01.09.2013)
Published in Genome research (01.09.2013)
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A20 and ABIN1 Suppression of a Keratinocyte Inflammatory Program with a Shared Single-Cell Expression Signature in Diverse Human Rashes
Harirchian, Paymann, Lee, Jerry, Hilz, Stephanie, Sedgewick, Andrew J., Perez White, Bethany E., Kesling, Michael J., Mully, Thaddeus, Golovato, Justin, Gray, Matthew, Mauro, Theodora M., Purdom, Elizabeth, Kim, Esther A., Sbitany, Hani, Bhutani, Tina, Vaske, Charles J., Benz, Stephen C., Cho, Raymond J., Cheng, Jeffrey B.
Published in Journal of investigative dermatology (01.06.2019)
Published in Journal of investigative dermatology (01.06.2019)
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Preexisting Skin-Resident CD8 and γδ T-cell Circuits Mediate Immune Response in Merkel Cell Carcinoma and Predict Immunotherapy Efficacy
Reinstein, Zachary Z., Zhang, Yue, Ospina, Oscar E., Nichols, Matt D., Chu, Victoria A., Pulido, Alvaro de Mingo, Prieto, Karol, Nguyen, Jonathan V., Yin, Rui, Moran Segura, Carlos, Usman, Ahmed, Sell, Brittney, Ng, Spencer, de la Iglesia, Janis V., Chandra, Sunandana, Sosman, Jeffrey A., Cho, Raymond J., Cheng, Jeffrey B., Ivanova, Ellie, Koralov, Sergei B., Slebos, Robbert J.C., Chung, Christine H., Khushalani, Nikhil I., Messina, Jane L., Sarnaik, Amod A., Zager, Jonathan S., Sondak, Vernon K., Vaske, Charles, Kim, Sungjune, Brohl, Andrew S., Mi, Xinlei, Pierce, Brian G., Wang, Xuefeng, Fridley, Brooke L., Tsai, Kenneth Y., Choi, Jaehyuk
Published in Cancer discovery (04.09.2024)
Published in Cancer discovery (04.09.2024)
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Epigenetic and transcriptional determinants of the human breast
Gascard, Philippe, Bilenky, Misha, Sigaroudinia, Mahvash, Zhao, Jianxin, Li, Luolan, Carles, Annaick, Delaney, Allen, Tam, Angela, Kamoh, Baljit, Cho, Stephanie, Griffith, Malachi, Chu, Andy, Robertson, Gordon, Cheung, Dorothy, Li, Irene, Heravi-Moussavi, Alireza, Moksa, Michelle, Mingay, Matthew, Hussainkhel, Angela, Davis, Brad, Nagarajan, Raman P, Hong, Chibo, Echipare, Lorigail, O'Geen, Henriette, Hangauer, Matthew J, Cheng, Jeffrey B, Neel, Dana, Hu, Donglei, McManus, Michael T, Moore, Richard, Mungall, Andrew, Ma, Yussanne, Plettner, Patrick, Ziv, Elad, Wang, Ting, Farnham, Peggy J, Jones, Steven J M, Marra, Marco A, Tlsty, Thea D, Costello, Joseph F, Hirst, Martin
Published in Nature communications (18.02.2015)
Published in Nature communications (18.02.2015)
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