Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research
Kern, Colin, Wang, Ying, Xu, Xiaoqin, Pan, Zhangyuan, Halstead, Michelle, Chanthavixay, Ganrea, Saelao, Perot, Waters, Susan, Xiang, Ruidong, Chamberlain, Amanda, Korf, Ian, Delany, Mary E, Cheng, Hans H, Medrano, Juan F, Van Eenennaam, Alison L, Tuggle, Chris K, Ernst, Catherine, Flicek, Paul, Quon, Gerald, Ross, Pablo, Zhou, Huaijun
Published in Nature communications (23.03.2021)
Published in Nature communications (23.03.2021)
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development and characterization of a 60K SNP chip for chicken
Groenen, Martien A.M, Megens, Hendrik-Jan, Zare, Yalda, Warren, Wesley C, Hillier, LaDeana W, Crooijmans, Richard P.M.A, Vereijken, Addie, Okimoto, Ron, Muir, William M, Cheng, Hans H
Published in BMC genomics (31.05.2011)
Published in BMC genomics (31.05.2011)
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Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species
Kern, Colin, Wang, Ying, Chitwood, James, Korf, Ian, Delany, Mary, Cheng, Hans, Medrano, Juan F, Van Eenennaam, Alison L, Ernst, Catherine, Ross, Pablo, Zhou, Huaijun
Published in BMC genomics (18.09.2018)
Published in BMC genomics (18.09.2018)
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Identification of Marek's disease virus genes associated with virulence of US strains
Dunn, John R, Black Pyrkosz, Alexis, Steep, Alec, Cheng, Hans H
Published in Journal of general virology (01.07.2019)
Published in Journal of general virology (01.07.2019)
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A New Chicken Genome Assembly Provides Insight into Avian Genome Structure
Warren, Wesley C, Hillier, LaDeana W, Tomlinson, Chad, Minx, Patrick, Kremitzki, Milinn, Graves, Tina, Markovic, Chris, Bouk, Nathan, Pruitt, Kim D, Thibaud-Nissen, Francoise, Schneider, Valerie, Mansour, Tamer A, Brown, C Titus, Zimin, Aleksey, Hawken, Rachel, Abrahamsen, Mitch, Pyrkosz, Alexis B, Morisson, Mireille, Fillon, Valerie, Vignal, Alain, Chow, William, Howe, Kerstin, Fulton, Janet E, Miller, Marcia M, Lovell, Peter, Mello, Claudio V, Wirthlin, Morgan, Mason, Andrew S, Kuo, Richard, Burt, David W, Dodgson, Jerry B, Cheng, Hans H
Published in G3 : genes - genomes - genetics (01.01.2017)
Published in G3 : genes - genomes - genetics (01.01.2017)
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Transcriptional profiles of host-pathogen responses to necrotic enteritis and differential regulation of immune genes in two inbreed chicken lines showing disparate disease susceptibility
Kim, Duk Kyung, Lillehoj, Hyun S, Jang, Seung I, Lee, Sung Hyen, Hong, Yeong Ho, Cheng, Hans H
Published in PloS one (11.12.2014)
Published in PloS one (11.12.2014)
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A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Rice, Edward S, Alberdi, Antton, Alfieri, James, Athrey, Giridhar, Balacco, Jennifer R, Bardou, Philippe, Blackmon, Heath, Charles, Mathieu, Cheng, Hans H, Fedrigo, Olivier, Fiddaman, Steven R, Formenti, Giulio, Frantz, Laurent A F, Gilbert, M Thomas P, Hearn, Cari J, Jarvis, Erich D, Klopp, Christophe, Marcos, Sofia, Mason, Andrew S, Velez-Irizarry, Deborah, Xu, Luohao, Warren, Wesley C
Published in BMC biology (22.11.2023)
Published in BMC biology (22.11.2023)
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The immune cell landscape and response of Marek's disease resistant and susceptible chickens infected with Marek's disease virus
Warren, Wesley C, Rice, Edward S, Meyer, Ashley, Hearn, Cari J, Steep, Alec, Hunt, Henry D, Monson, Melissa S, Lamont, Susan J, Cheng, Hans H
Published in Scientific reports (01.04.2023)
Published in Scientific reports (01.04.2023)
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Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
Andersson, Leif, Archibald, Alan L, Bottema, Cynthia D, Brauning, Rudiger, Burgess, Shane C, Burt, Dave W, Casas, Eduardo, Cheng, Hans H, Clarke, Laura, Couldrey, Christine, Dalrymple, Brian P, Elsik, Christine G, Foissac, Sylvain, Giuffra, Elisabetta, Groenen, Martien A, Hayes, Ben J, Huang, LuSheng S, Khatib, Hassan, Kijas, James W, Kim, Heebal, Lunney, Joan K, McCarthy, Fiona M, McEwan, John C, Moore, Stephen, Nanduri, Bindu, Notredame, Cedric, Palti, Yniv, Plastow, Graham S, Reecy, James M, Rohrer, Gary A, Sarropoulou, Elena, Schmidt, Carl J, Silverstein, Jeffrey, Tellam, Ross L, Tixier-Boichard, Michele, Tosser-Klopp, Gwenola, Tuggle, Christopher K, Vilkki, Johanna, White, Stephen N, Zhao, Shuhong, Zhou, Huaijun
Published in Genome Biology (25.03.2015)
Published in Genome Biology (25.03.2015)
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Differences in CD8αα and cecal microbiome community during proliferation and late cytolytic phases of Marek's disease virus infection are associated with genetic resistance to Marek's disease
Perumbakkam, Sudeep, Hunt, Henry D., Cheng, Hans H.
Published in FEMS microbiology ecology (01.12.2016)
Published in FEMS microbiology ecology (01.12.2016)
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Transcriptional Profiling of MEq-Dependent Genes in Marek’s Disease Resistant and Susceptible Inbred Chicken Lines
Subramaniam, Sugalesini, Preeyanon, Likit, Cheng, Hans H, Zhou, Huaijun
Published in PloS one (21.10.2013)
Published in PloS one (21.10.2013)
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Comparison and contrast of genes and biological pathways responding to Marek's disease virus infection using allele-specific expression and differential expression in broiler and layer chickens
Perumbakkam, Sudeep, Muir, William M, Black-Pyrkosz, Alexis, Okimoto, Ron, Cheng, Hans H
Published in BMC genomics (30.01.2013)
Published in BMC genomics (30.01.2013)
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Genome to Phenome: Improving Animal Health, Production, and Well-Being - A New USDA Blueprint for Animal Genome Research 2018-2027
Rexroad, Caird, Vallet, Jeffrey, Matukumalli, Lakshmi Kumar, Reecy, James, Bickhart, Derek, Blackburn, Harvey, Boggess, Mark, Cheng, Hans, Clutter, Archie, Cockett, Noelle, Ernst, Catherine, Fulton, Janet E, Liu, John, Lunney, Joan, Neibergs, Holly, Purcell, Catherine, Smith, Timothy P L, Sonstegard, Tad, Taylor, Jerry, Telugu, Bhanu, Eenennaam, Alison Van, Tassell, Curtis P Van, Wells, Kevin
Published in Frontiers in genetics (16.05.2019)
Published in Frontiers in genetics (16.05.2019)
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