Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
Chen, Edward Y, Tan, Christopher M, Kou, Yan, Duan, Qiaonan, Wang, Zichen, Meirelles, Gabriela Vaz, Clark, Neil R, Ma'ayan, Avi
Published in BMC bioinformatics (15.04.2013)
Published in BMC bioinformatics (15.04.2013)
Get full text
Journal Article
LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures
Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L, Fernandez, Nicolas F, Rouillard, Andrew D, Tan, Christopher M, Chen, Edward Y, Golub, Todd R, Sorger, Peter K, Subramanian, Aravind, Ma'ayan, Avi
Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
Get full text
Journal Article
The characteristic direction: a geometrical approach to identify differentially expressed genes
Clark, Neil R, Hu, Kevin S, Feldmann, Axel S, Kou, Yan, Chen, Edward Y, Duan, Qiaonan, Ma'ayan, Avi
Published in BMC bioinformatics (21.03.2014)
Published in BMC bioinformatics (21.03.2014)
Get full text
Journal Article
Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers
Chen, Edward Y., Xu, Huilei, Gordonov, Simon, Lim, Maribel P., Perkins, Matthew H., Ma'ayan, Avi
Published in Bioinformatics (01.01.2012)
Published in Bioinformatics (01.01.2012)
Get full text
Journal Article
In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer
Dervovic, Dzana, Malik, Ahmad A., Chen, Edward L. Y., Narimatsu, Masahiro, Adler, Nina, Afiuni-Zadeh, Somaieh, Krenbek, Dagmar, Martinez, Sebastien, Tsai, Ricky, Boucher, Jonathan, Berman, Jacob M., Teng, Katie, Ayyaz, Arshad, Lü, YiQing, Mbamalu, Geraldine, Loganathan, Sampath K., Lee, Jongbok, Zhang, Li, Guidos, Cynthia, Wrana, Jeffrey, Valipour, Arschang, Roux, Philippe P., Reimand, Jüri, Jackson, Hartland W., Schramek, Daniel
Published in Nature communications (31.05.2023)
Published in Nature communications (31.05.2023)
Get full text
Journal Article
Author Correction: In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer
Dervovic, Dzana, Malik, Ahmad A., Chen, Edward L. Y., Narimatsu, Masahiro, Adler, Nina, Afiuni-Zadeh, Somaieh, Krenbek, Dagmar, Martinez, Sebastien, Tsai, Ricky, Boucher, Jonathan, Berman, Jacob M., Teng, Katie, Ayyaz, Arshad, Lü, YiQing, Mbamalu, Geraldine, Loganathan, Sampath K., Lee, Jongbok, Zhang, Li, Guidos, Cynthia, Wrana, Jeffrey, Valipour, Arschang, Roux, Philippe P., Reimand, Jüri, Jackson, Hartland W., Schramek, Daniel
Published in Nature communications (05.09.2023)
Published in Nature communications (05.09.2023)
Get full text
Journal Article
Renoprotective Effect of Combined Inhibition of Angiotensin-Converting Enzyme and Histone Deacetylase
YIFEI ZHONG, CHEN, Edward Y, JOHN CIJIANG HE, RUIJIE LIU, CHUANG, Peter Y, MALLIPATTU, Sandeep K, TAN, Christopher M, CLARK, Neil R, YUEYI DENG, KLOTMAN, Paul E, MA'AYAN, Avi
Published in Journal of the American Society of Nephrology (01.05.2013)
Published in Journal of the American Society of Nephrology (01.05.2013)
Get full text
Journal Article
B-myb is an essential regulator of hematopoietic stem cell and myeloid progenitor cell development
Baker, Stacey J., Ma'ayan, Avi, Lieu, Yen K., John, Premila, Reddy, M. V. Ramana, Chen, Edward Y., Duan, Qiaonan, Snoeck, Hans-Willem, Reddy, E. Premkumar
Published in Proceedings of the National Academy of Sciences - PNAS (25.02.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (25.02.2014)
Get full text
Journal Article
An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions
Sevilla, Ana, Papatsenko, Dimitri, Mazloom, Amin R, Xu, Huilei, Vasileva, Ana, Unwin, Richard D, LeRoy, Gary, Chen, Edward Y, Garrett-Bakelman, Francine E, Lee, Dung-Fang, Trinite, Benjamin, Webb, Ryan L, Wang, Zichen, Su, Jie, Gingold, Julian, Melnick, Ari, Garcia, Benjamin A, Whetton, Anthony D, MacArthur, Ben D, Ma'ayan, Avi, Lemischka, Ihor R
Published in Frontiers in cell and developmental biology (19.03.2021)
Published in Frontiers in cell and developmental biology (19.03.2021)
Get full text
Journal Article
NOTCH1 signaling establishes the medullary thymic epithelial cell progenitor pool during mouse fetal development
Li, Jie, Gordon, Julie, Chen, Edward L Y, Xiao, Shiyun, Wu, Luying, Zúñiga-Pflücker, Juan Carlos, Manley, Nancy R
Published in Development (Cambridge) (22.06.2020)
Published in Development (Cambridge) (22.06.2020)
Get full text
Journal Article
HEB is required for the specification of fetal IL-17-producing γδ T cells
In, Tracy S. H., Trotman-Grant, Ashton, Fahl, Shawn, Chen, Edward L. Y., Zarin, Payam, Moore, Amanda J., Wiest, David L., Zúñiga-Pflücker, Juan Carlos, Anderson, Michele K.
Published in Nature communications (08.12.2017)
Published in Nature communications (08.12.2017)
Get full text
Journal Article
A systems approach identifies HIPK2 as a key regulator of kidney fibrosis
Jin, Yuanmeng, Ratnam, Krishna, Chuang, Peter Y, Fan, Ying, Zhong, Yifei, Dai, Yan, Mazloom, Amin R, Chen, Edward Y, D'Agati, Vivette, Xiong, Huabao, Ross, Michael J, Chen, Nan, Ma'ayan, Avi, He, John Cijiang
Published in Nature medicine (01.04.2012)
Published in Nature medicine (01.04.2012)
Get full text
Journal Article
Publisher Correction: A systems approach identifies HIPK2 as a key regulator of kidney fibrosis
Jin, Yuanmeng, Ratnam, Krishna, Chuang, Peter Y., Fan, Ying, Zhong, Yifei, Dai, Yan, Mazloom, Amin R., Chen, Edward Y., D’Agati, Vivette, Xiong, Huabao, Ross, Michael J., Chen, Nan, Ma’ayan, Avi, He, John Cijiang
Published in Nature medicine (01.08.2021)
Published in Nature medicine (01.08.2021)
Get full text
Journal Article
Krüppel-like factor 6 regulates mitochondrial function in the kidney
Mallipattu, Sandeep K, Horne, Sylvia J, D'Agati, Vivette, Narla, Goutham, Liu, Ruijie, Frohman, Michael A, Dickman, Kathleen, Chen, Edward Y, Ma'ayan, Avi, Bialkowska, Agnieszka B, Ghaleb, Amr M, Nandan, Mandayam O, Jain, Mukesh K, Daehn, Ilse, Chuang, Peter Y, Yang, Vincent W, He, John C
Published in The Journal of clinical investigation (01.03.2015)
Published in The Journal of clinical investigation (01.03.2015)
Get full text
Journal Article
Network2Canvas: network visualization on a canvas with enrichment analysis
Tan, Christopher M, Chen, Edward Y, Dannenfelser, Ruth, Clark, Neil R, Ma'ayan, Avi
Published in Bioinformatics (01.08.2013)
Published in Bioinformatics (01.08.2013)
Get full text
Journal Article
ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells
Xu, Huilei, Baroukh, Caroline, Dannenfelser, Ruth, Chen, Edward Y, Tan, Christopher M, Kou, Yan, Kim, Yujin E, Lemischka, Ihor R, Ma'ayan, Avi
Published in Database : the journal of biological databases and curation (2013)
Published in Database : the journal of biological databases and curation (2013)
Get full text
Journal Article
Transforming Growth Factor β Signaling Controls Activities of Human Intestinal CD8+ T Suppressor Cells
Rabinowitz, Keren M, Wang, Yuanyuan, Chen, Edward Y, Hovhannisyan, Zara, Chiang, David, Berin, M. Cecilia, Dahan, Stephanie, Chaussabel, Damien, Ma'ayan, Avi, Mayer, Lloyd
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2013)
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2013)
Get full text
Journal Article