In situ detection and genotyping of individual mRNA molecules
Larsson, Chatarina, Söderberg, Ola, Grundberg, Ida, Nilsson, Mats
Published in Nature methods (01.05.2010)
Published in Nature methods (01.05.2010)
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Journal Article
In situ detection of individual mRNA molecules and protein complexes or post-translational modifications using padlock probes combined with the in situ proximity ligation assay
Weibrecht, Irene, Lundin, Elin, Kiflemariam, Sara, Mignardi, Marco, Grundberg, Ida, Larsson, Chatarina, Koos, Björn, Nilsson, Mats, Söderberg, Ola
Published in Nature protocols (01.02.2013)
Published in Nature protocols (01.02.2013)
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Journal Article
Prognostic genome and transcriptome signatures in colorectal cancers
Nunes, Luís, Li, Fuqiang, Wu, Meizhen, Luo, Tian, Hammarström, Klara, Torell, Emma, Ljuslinder, Ingrid, Mezheyeuski, Artur, Edqvist, Per-Henrik, Löfgren-Burström, Anna, Zingmark, Carl, Edin, Sofia, Larsson, Chatarina, Mathot, Lucy, Osterman, Erik, Osterlund, Emerik, Ljungström, Viktor, Neves, Inês, Yacoub, Nicole, Guðnadóttir, Unnur, Birgisson, Helgi, Enblad, Malin, Ponten, Fredrik, Palmqvist, Richard, Xu, Xun, Uhlén, Mathias, Wu, Kui, Glimelius, Bengt, Lin, Cong, Sjöblom, Tobias
Published in Nature (London) (05.09.2024)
Published in Nature (London) (05.09.2024)
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Journal Article
Oligonucleotide gap-fill ligation for mutation detection and sequencing in situ
Mignardi, Marco, Mezger, Anja, Qian, Xiaoyan, La Fleur, Linnea, Botling, Johan, Larsson, Chatarina, Nilsson, Mats
Published in Nucleic acids research (15.12.2015)
Published in Nucleic acids research (15.12.2015)
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Journal Article
Whole-genome and transcriptome sequencing of 1063 colorectal cancers reveals novel drivers and prognostic subgroups
Nunes, Luis, Li, Fuqiang, Hammarstrom, Klara, Wu, Meizhen, Lundin, Emma, Luo, Tian, Mezheyeuski, Artur, Ljuslinder, Ingrid, Mathot, Lucy, Yacoub, Nicole, Lofgren-Burstrom, Anna, Zingmark, Carl, Edqvist, Per-Henrik, Neves, Ines, Gudnadottir, Unnur, Osterman, Erik, Denes, Anna-Maria, Larsson, Chatarina, Ponten, Frederik, Palmqvist, Richard, Wu, Kui, Lin, Cong, Uhlén, Mathias, Glimelius, Bengt, Sjoblom, Tobias
Published in EUROPEAN JOURNAL OF HUMAN GENETICS (2023)
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Published in EUROPEAN JOURNAL OF HUMAN GENETICS (2023)
Journal Article
Conference Proceeding
Restoration of KMT2C/MLL3 in human colorectal cancer cells reinforces genome-wide H3K4me1 profiles and influences cell growth and gene expression
Larsson, Chatarina, Cordeddu, Lina, Siggens, Lee, Pandzic, Tatjana, Kundu, Snehangshu, He, Liqun, Ali, Muhammad Akhtar, Pristovšek, Nuša, Hartman, Karin, Ekwall, Karl, Sjöblom, Tobias
Published in Clinical epigenetics (29.05.2020)
Published in Clinical epigenetics (29.05.2020)
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Journal Article
Somatic PRDM2 c.4467delA mutations in colorectal cancers control histone methylation and tumor growth
Pandzic, Tatjana, Rendo, Veronica, Lim, Jinyeong, Larsson, Chatarina, Larsson, Jimmy, Stoimenov, Ivaylo, Kundu, Snehangshu, Ali, Muhammad Akhtar, Hellström, Mats, He, Liqun, Lindroth, Anders M, Sjöblom, Tobias
Published in Oncotarget (17.11.2017)
Published in Oncotarget (17.11.2017)
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Journal Article
Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing
Jiao, Xiang, Hooper, Sean D, Djureinovic, Tatjana, Larsson, Chatarina, Wärnberg, Fredrik, Tellgren-Roth, Christian, Botling, Johan, Sjöblom, Tobias
Published in BMC genomics (12.03.2013)
Published in BMC genomics (12.03.2013)
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Journal Article
An immune score reflecting pro- and anti-tumoural balance of tumour microenvironment has major prognostic impact and predicts immunotherapy response in solid cancersResearch in context
Artur Mezheyeuski, Max Backman, Johanna Mattsson, Alfonso Martín-Bernabé, Chatarina Larsson, Ina Hrynchyk, Klara Hammarström, Simon Ström, Joakim Ekström, Siarhei Mauchanski, Salome Khelashvili, Amanda Lindberg, Margrét Agnarsdóttir, Per-Henrik Edqvist, Jutta Huvila, Ulrika Segersten, Per-Uno Malmström, Johan Botling, Björn Nodin, Charlotta Hedner, David Borg, Jenny Brändstedt, Hanna Sartor, Karin Leandersson, Bengt Glimelius, Anna Portyanko, Fredrik Ponten, Karin Jirström, Patrick Micke, Tobias Sjöblom
Published in EBioMedicine (01.02.2023)
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Published in EBioMedicine (01.02.2023)
Journal Article
Analyzing genes using closing and replicating circles
Nilsson, Mats, Dahl, Fredrik, Larsson, Chatarina, Gullberg, Mats, Stenberg, Johan
Published in Trends in biotechnology (Regular ed.) (01.02.2006)
Published in Trends in biotechnology (Regular ed.) (01.02.2006)
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Journal Article
Ligation-based molecular tools for lab-on-a-chip devices
Melin, Jonas, Jarvius, Jonas, Larsson, Chatarina, Söderberg, Ola, Landegren, Ulf, Nilsson, Mats
Published in New biotechnology (01.06.2008)
Published in New biotechnology (01.06.2008)
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Journal Article
Detection of Alu sequences and mtDNA in comets using padlock probes
Shaposhnikov, Sergey, Larsson, Chatarina, Henriksson, Sara, Collins, Andrew, Nilsson, Mats
Published in Mutagenesis (01.07.2006)
Published in Mutagenesis (01.07.2006)
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Journal Article
Analysis of genes, transcripts, and proteins via DNA ligation
Conze, Tim, Shetye, Alysha, Tanaka, Yuki, Gu, Jijuan, Larsson, Chatarina, Göransson, Jenny, Tavoosidana, Gholamreza, Söderberg, Ola, Nilsson, Mats, Landegren, Ulf
Published in Annual review of analytical chemistry (Palo Alto, Calif.) (01.01.2009)
Published in Annual review of analytical chemistry (Palo Alto, Calif.) (01.01.2009)
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Journal Article
Single-cell A3243G Mitochondrial DNA Mutation Load Assays for Segregation Analysis
Jahangir Tafrechi, Roshan S, van de Rijke, Frans M, Allallou, Amin, Larsson, Chatarina, Sloos, Willem C.R, van de Sande, Marchien, Wahlby, Carolina, Janssen, George M.C, Raap, Anton K
Published in The journal of histochemistry and cytochemistry (01.11.2007)
Published in The journal of histochemistry and cytochemistry (01.11.2007)
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Journal Article
O32: Genotyping single DNA molecules in situ
Nilsson, Mats, Larsson, Chatarina, Henriksson, Sara, Göransson, Jenny, Jarvius, Jonas, Melin, Jonas, Dahl, Fredrik, Isaksson, Magnus, Stenberg, Johan, Wählby, Carolina
Published in European journal of medical genetics (01.10.2005)
Published in European journal of medical genetics (01.10.2005)
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Journal Article
Prospects for in situ analyses of individual and complexes of DNA, RNA, and protein molecules with padlock and proximity probes
Landegren, Ulf, Nilsson, Mats, Gullberg, Mats, Söderberg, Ola, Jarvius, Malin, Larsson, Chatarina, Jarvius, Jonas
Published in Methods in cell biology (2004)
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Published in Methods in cell biology (2004)
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