Identification of differentially methylated cell types in epigenome-wide association studies
Zheng, Shijie C., Breeze, Charles E., Beck, Stephan, Teschendorff, Andrew E.
Published in Nature methods (01.12.2018)
Published in Nature methods (01.12.2018)
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Journal Article
EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data
Teschendorff, Andrew E, Zhu, Tianyu, Breeze, Charles E, Beck, Stephan
Published in Genome Biology (04.09.2020)
Published in Genome Biology (04.09.2020)
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Journal Article
A mammalian methylation array for profiling methylation levels at conserved sequences
Arneson, Adriana, Haghani, Amin, Thompson, Michael J., Pellegrini, Matteo, Kwon, Soo Bin, Vu, Ha, Maciejewski, Emily, Yao, Mingjia, Li, Caesar Z., Lu, Ake T., Morselli, Marco, Rubbi, Liudmilla, Barnes, Bret, Hansen, Kasper D., Zhou, Wanding, Breeze, Charles E., Ernst, Jason, Horvath, Steve
Published in Nature communications (10.02.2022)
Published in Nature communications (10.02.2022)
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Journal Article
African ancestry-derived APOL1 risk genotypes show proximal epigenetic associations
Breeze, Charles E, Lin, Bridget M, Winkler, Cheryl A, Franceschini, Nora
Published in BMC genomics (08.05.2024)
Published in BMC genomics (08.05.2024)
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Journal Article
Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations
Breeze, Charles E, Haugen, Eric, Reynolds, Alex, Teschendorff, Andrew, van Dongen, Jenny, Lan, Qing, Rothman, Nathaniel, Bourque, Guillaume, Dunham, Ian, Beck, Stephan, Stamatoyannopoulos, John, Franceschini, Nora, Berndt, Sonja I
Published in Genome Biology (07.01.2022)
Published in Genome Biology (07.01.2022)
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Journal Article
Snoring and breathing pauses during sleep: interview survey of a United Kingdom population sample reveals a significant increase in the rates of sleep apnoea and obesity over the last 20 years - data from the UK sleep survey
Lechner, Matt, Breeze, Charles E., Ohayon, Maurice M., Kotecha, Bhik
Published in Sleep medicine (01.02.2019)
Published in Sleep medicine (01.02.2019)
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Journal Article
FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases
Breeze, Charles E, Haugen, Eric, Gutierrez-Arcelus, María, Yao, Xiaozheng, Teschendorff, Andrew, Beck, Stephan, Dunham, Ian, Stamatoyannopoulos, John, Franceschini, Nora, Machiela, Mitchell J, Berndt, Sonja I
Published in Genome Biology (02.01.2024)
Published in Genome Biology (02.01.2024)
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Epigenetic reprogramming of fallopian tube fimbriae in BRCA mutation carriers defines early ovarian cancer evolution
Bartlett, Thomas E., Chindera, Kantaraja, McDermott, Jacqueline, Breeze, Charles E., Cooke, William R., Jones, Allison, Reisel, Daniel, Karegodar, Smita T., Arora, Rupali, Beck, Stephan, Menon, Usha, Dubeau, Louis, Widschwendter, Martin
Published in Nature communications (24.05.2016)
Published in Nature communications (24.05.2016)
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Journal Article
Diversity in EWAS: current state, challenges, and solutions
Breeze, Charles E, Wong, Jason Y. Y, Beck, Stephan, Berndt, Sonja I, Franceschini, Nora
Published in Genome medicine (06.07.2022)
Published in Genome medicine (06.07.2022)
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Journal Article
Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs
van Dongen, Jenny, Ehli, Erik A, Jansen, Rick, van Beijsterveldt, Catharina E M, Willemsen, Gonneke, Hottenga, Jouke J, Kallsen, Noah A, Peyton, Shanna A, Breeze, Charles E, Kluft, Cornelis, Heijmans, Bastiaan T, Bartels, Meike, Davies, Gareth E, Boomsma, Dorret I
Published in Epigenetics & chromatin (25.09.2018)
Published in Epigenetics & chromatin (25.09.2018)
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Journal Article
eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data
Breeze, Charles E., Paul, Dirk S., van Dongen, Jenny, Butcher, Lee M., Ambrose, John C., Barrett, James E., Lowe, Robert, Rakyan, Vardhman K., Iotchkova, Valentina, Frontini, Mattia, Downes, Kate, Ouwehand, Willem H., Laperle, Jonathan, Jacques, Pierre-Étienne, Bourque, Guillaume, Bergmann, Anke K., Siebert, Reiner, Vellenga, Edo, Saeed, Sadia, Matarese, Filomena, Martens, Joost H.A., Stunnenberg, Hendrik G., Teschendorff, Andrew E., Herrero, Javier, Birney, Ewan, Dunham, Ian, Beck, Stephan
Published in Cell reports (Cambridge) (15.11.2016)
Published in Cell reports (Cambridge) (15.11.2016)
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Journal Article
The missing diversity in human epigenomic studies
Breeze, Charles E., Beck, Stephan, Berndt, Sonja I., Franceschini, Nora
Published in Nature genetics (01.06.2022)
Published in Nature genetics (01.06.2022)
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Journal Article
Early detection of HPV-associated oropharyngeal cancer
Lechner, Matt, Breeze, Charles E, O'Mahony, James F, Masterson, Liam
Published in The Lancet (British edition) (25.05.2019)
Published in The Lancet (British edition) (25.05.2019)
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Journal Article
A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution
Zhu, Tianyu, Liu, Jacklyn, Beck, Stephan, Pan, Sun, Capper, David, Lechner, Matt, Thirlwell, Chrissie, Breeze, Charles E., Teschendorff, Andrew E.
Published in Nature methods (01.03.2022)
Published in Nature methods (01.03.2022)
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Journal Article
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data
Breeze, Charles E, Reynolds, Alex P, van Dongen, Jenny, Dunham, Ian, Lazar, John, Neph, Shane, Vierstra, Jeff, Bourque, Guillaume, Teschendorff, Andrew E, Stamatoyannopoulos, John A, Beck, Stephan
Published in Bioinformatics (01.11.2019)
Published in Bioinformatics (01.11.2019)
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Journal Article
HGF-rs12536657 and Ocular Biometric Parameters in Hyperopic Children, Emmetropic Adolescents, and Young Adults: A Multicenter Quantitative Trait Study
Patiño-García, Ana, Recalde, Sergio, Santos, J. L., Breeze, Charles E., Pueyo, Victoria, Noval, Susana, Galdós, Marta, Bonet-Farriol, Elvira, Barrio-Barrio, Jesús, Alfonso-Bartolozzi, Belén
Published in Journal of ophthalmology (01.01.2019)
Published in Journal of ophthalmology (01.01.2019)
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Journal Article
EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI
Zheng, Shijie C, Breeze, Charles E, Beck, Stephan, Dong, Danyue, Zhu, Tianyu, Ma, Liangxiao, Ye, Wei, Zhang, Guoqing, Teschendorff, Andrew E
Published in Bioinformatics (09.11.2019)
Published in Bioinformatics (09.11.2019)
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