A Modeling Approach to Explain Mutually Exclusive and Co-Occurring Genetic Alterations in Bladder Tumorigenesis
Remy, Elisabeth, Rebouissou, Sandra, Chaouiya, Claudine, Zinovyev, Andrei, Radvanyi, François, Calzone, Laurence
Published in Cancer research (Chicago, Ill.) (01.10.2015)
Published in Cancer research (Chicago, Ill.) (01.10.2015)
Get full text
Journal Article
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
Fauré, Adrien, Naldi, Aurélien, Chaouiya, Claudine, Thieffry, Denis
Published in Bioinformatics (15.07.2006)
Published in Bioinformatics (15.07.2006)
Get full text
Journal Article
Diversity and plasticity of Th cell types predicted from regulatory network modelling
Naldi, Aurélien, Carneiro, Jorge, Chaouiya, Claudine, Thieffry, Denis
Published in PLoS computational biology (01.09.2010)
Published in PLoS computational biology (01.09.2010)
Get full text
Journal Article
Logical Modeling and Dynamical Analysis of Cellular Networks
Abou-Jaoudé, Wassim, Traynard, Pauline, Monteiro, Pedro T, Saez-Rodriguez, Julio, Helikar, Tomáš, Thieffry, Denis, Chaouiya, Claudine
Published in Frontiers in genetics (31.05.2016)
Published in Frontiers in genetics (31.05.2016)
Get full text
Journal Article
Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0
Naldi, Aurélien, Hernandez, Céline, Abou-Jaoudé, Wassim, Monteiro, Pedro T, Chaouiya, Claudine, Thieffry, Denis
Published in Frontiers in physiology (19.06.2018)
Published in Frontiers in physiology (19.06.2018)
Get full text
Journal Article
In Silico Logical Modelling to Uncover Cooperative Interactions in Cancer
Selvaggio, Gianluca, Chaouiya, Claudine, Janody, Florence
Published in International journal of molecular sciences (01.05.2021)
Published in International journal of molecular sciences (01.05.2021)
Get full text
Journal Article
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Naldi, Aurélien, Hernandez, Céline, Levy, Nicolas, Stoll, Gautier, Monteiro, Pedro T, Chaouiya, Claudine, Helikar, Tomáš, Zinovyev, Andrei, Calzone, Laurence, Cohen-Boulakia, Sarah, Thieffry, Denis, Paulevé, Loïc
Published in Frontiers in physiology (19.06.2018)
Published in Frontiers in physiology (19.06.2018)
Get full text
Journal Article
Bringing dicynodonts back to life: paleobiology and anatomy of a new emydopoid genus from the Upper Permian of Mozambique
Castanhinha, Rui, Araújo, Ricardo, Júnior, Luís C, Angielczyk, Kenneth D, Martins, Gabriel G, Martins, Rui M S, Chaouiya, Claudine, Beckmann, Felix, Wilde, Fabian
Published in PloS one (04.12.2013)
Published in PloS one (04.12.2013)
Get full text
Journal Article
Path2Models: large-scale generation of computational models from biochemical pathway maps
Büchel, Finja, Rodriguez, Nicolas, Swainston, Neil, Wrzodek, Clemens, Czauderna, Tobias, Keller, Roland, Mittag, Florian, Schubert, Michael, Glont, Mihai, Golebiewski, Martin, van Iersel, Martijn, Keating, Sarah, Rall, Matthias, Wybrow, Michael, Hermjakob, Henning, Hucka, Michael, Kell, Douglas B, Müller, Wolfgang, Mendes, Pedro, Zell, Andreas, Chaouiya, Claudine, Saez-Rodriguez, Julio, Schreiber, Falk, Laibe, Camille, Dräger, Andreas, Le Novère, Nicolas
Published in BMC systems biology (01.11.2013)
Published in BMC systems biology (01.11.2013)
Get full text
Journal Article
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2
Hucka, Michael, Bergmann, Frank T, Chaouiya, Claudine, Dräger, Andreas, Hoops, Stefan, Keating, Sarah M, König, Matthias, Novère, Nicolas Le, Myers, Chris J, Olivier, Brett G, Sahle, Sven, Schaff, James C, Sheriff, Rahuman, Smith, Lucian P, Waltemath, Dagmar, Wilkinson, Darren J, Zhang, Fengkai
Published in Journal of integrative bioinformatics (20.06.2019)
Published in Journal of integrative bioinformatics (20.06.2019)
Get full text
Journal Article
Estimating Attractor Reachability in Asynchronous Logical Models
Mendes, Nuno D, Henriques, Rui, Remy, Elisabeth, Carneiro, Jorge, Monteiro, Pedro T, Chaouiya, Claudine
Published in Frontiers in physiology (07.09.2018)
Published in Frontiers in physiology (07.09.2018)
Get full text
Journal Article
A discrete model of Drosophila eggshell patterning reveals cell-autonomous and juxtacrine effects
Fauré, Adrien, Vreede, Barbara M I, Sucena, Elio, Chaouiya, Claudine
Published in PLoS computational biology (01.03.2014)
Published in PLoS computational biology (01.03.2014)
Get full text
Journal Article
EpiLog: A software for the logical modelling of epithelial dynamics
Varela, Pedro L, Ramos, Camila V, Monteiro, Pedro T, Chaouiya, Claudine
Published in F1000 research (2018)
Published in F1000 research (2018)
Get full text
Journal Article
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
Waltemath, Dagmar, Bergmann, Frank T, Chaouiya, Claudine, Czauderna, Tobias, Gleeson, Padraig, Goble, Carole, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Krebs, Olga, Le Novère, Nicolas, Mi, Huaiyu, Moraru, Ion I, Myers, Chris J, Nickerson, David, Olivier, Brett G, Rodriguez, Nicolas, Schreiber, Falk, Smith, Lucian, Zhang, Fengkai, Bonnet, Eric
Published in Environmental microbiome (09.08.2018)
Published in Environmental microbiome (09.08.2018)
Get full text
Journal Article
Logical modelling and analysis of the budding yeast cell cycle
Fauré, Adrien, Chaouiya, Claudine, Ciliberto, Andrea, Thieffry, Denis
Published in BMC bioinformatics (20.11.2007)
Published in BMC bioinformatics (20.11.2007)
Get full text
Journal Article
SBML Level 3 package: Qualitative Models, Version 1, Release 1
Chaouiya, Claudine, Keating, Sarah M., Berenguier, Duncan, Naldi, Aurélien, Thieffry, Denis, Iersel, Martijn P. van, Le Novère, Nicolas, Helikar, Tomáš
Published in Journal of integrative bioinformatics (01.06.2015)
Published in Journal of integrative bioinformatics (01.06.2015)
Get full text
Journal Article