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PLUS: Predicting cancer metastasis potential based on positive and unlabeled learning
Zhou, Junyi, Lu, Xiaoyu, Chang, Wennan, Wan, Changlin, Lu, Xiongbin, Zhang, Chi, Cao, Sha
Published in PLoS computational biology (01.03.2022)
Published in PLoS computational biology (01.03.2022)
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Acid–base Homeostasis and Implications to the Phenotypic Behaviors of Cancer
Zhou, Yi, Chang, Wennan, Lu, Xiaoyu, Wang, Jin, Zhang, Chi, Xu, Ying
Published in Genomics, proteomics & bioinformatics (01.12.2023)
Published in Genomics, proteomics & bioinformatics (01.12.2023)
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M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data
Zhang, Yu, Wan, Changlin, Wang, Pengcheng, Chang, Wennan, Huo, Yan, Chen, Jian, Ma, Qin, Cao, Sha, Zhang, Chi
Published in BMC bioinformatics (20.12.2019)
Published in BMC bioinformatics (20.12.2019)
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Single cell cortical bone transcriptomics define novel osteolineage gene sets altered in chronic kidney disease
Agoro, Rafiou, Nookaew, Intawat, Noonan, Megan L., Marambio, Yamil G., Liu, Sheng, Chang, Wennan, Gao, Hongyu, Hibbard, Lainey M., Metzger, Corinne E., Horan, Daniel, Thompson, William R., Xuei, Xiaoling, Liu, Yunlong, Zhang, Chi, Robling, Alexander G., Bonewald, Lynda F., Wan, Jun, White, Kenneth E.
Published in Frontiers in endocrinology (Lausanne) (26.01.2023)
Published in Frontiers in endocrinology (Lausanne) (26.01.2023)
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Pipeline for characterizing alternative mechanisms (PCAM) based on bi-clustering to study colorectal cancer heterogeneity
Cao, Sha, Chang, Wennan, Wan, Changlin, Lu, Xiaoyu, Dang, Pengtao, Zhou, Xinyu, Zhu, Haiqi, Chen, Jian, Li, Bo, Zang, Yong, Wang, Yijie, Zhang, Chi
Published in Computational and structural biotechnology journal (01.01.2023)
Published in Computational and structural biotechnology journal (01.01.2023)
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A graph neural network model to estimate cell-wise metabolic flux using single-cell RNA-seq data
Alghamdi, Norah, Chang, Wennan, Dang, Pengtao, Lu, Xiaoyu, Wan, Changlin, Gampala, Silpa, Huang, Zhi, Wang, Jiashi, Ma, Qin, Zang, Yong, Fishel, Melissa, Cao, Sha, Zhang, Chi
Published in Genome research (01.10.2021)
Published in Genome research (01.10.2021)
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Neutrophils resist ferroptosis and promote breast cancer metastasis through aconitate decarboxylase 1
Zhao, Yun, Liu, Zhongshun, Liu, Guoqiang, Zhang, Yuting, Liu, Sheng, Gan, Dailin, Chang, Wennan, Peng, Xiaoxia, Sung, Eun Suh, Gilbert, Keegan, Zhu, Yini, Wang, Xuechun, Zeng, Ziyu, Baldwin, Hope, Ren, Guanzhu, Weaver, Jessica, Huron, Anna, Mayberry, Toni, Wang, Qingfei, Wang, Yujue, Diaz-Rubio, Maria Elena, Su, Xiaoyang, Stack, M. Sharon, Zhang, Siyuan, Lu, Xuemin, Sheldon, Ryan D., Li, Jun, Zhang, Chi, Wan, Jun, Lu, Xin
Published in Cell metabolism (03.10.2023)
Published in Cell metabolism (03.10.2023)
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Supervised clustering of high-dimensional data using regularized mixture modeling
Chang, Wennan, Wan, Changlin, Zang, Yong, Zhang, Chi, Cao, Sha
Published in Briefings in bioinformatics (20.07.2021)
Published in Briefings in bioinformatics (20.07.2021)
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LTMG: a novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data
Wan, Changlin, Chang, Wennan, Zhang, Yu, Shah, Fenil, Lu, Xiaoyu, Zang, Yong, Zhang, Anru, Cao, Sha, Fishel, Melissa L, Ma, Qin, Zhang, Chi
Published in Nucleic acids research (10.10.2019)
Published in Nucleic acids research (10.10.2019)
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FLUXestimator: a webserver for predicting metabolic flux and variations using transcriptomics data
Zhang, Zixuan, Zhu, Haiqi, Dang, Pengtao, Wang, Jia, Chang, Wennan, Wang, Xiao, Alghamdi, Norah, Lu, Alex, Zang, Yong, Wu, Wenzhuo, Wang, Yijie, Zhang, Yu, Cao, Sha, Zhang, Chi
Published in Nucleic acids research (05.07.2023)
Published in Nucleic acids research (05.07.2023)
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Abstract 3217: An integrated web server for multi-omics data deconvolution
Lu, Xiaoyu, Dang, Pengtao, Tu, Szu-Wei, Chang, Wennan, Wan, Changlin, Zhang, Chi, Cao, Sha
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Physioxia-induced downregulation of Tet2 in hematopoietic stem cells contributes to enhanced self-renewal
Aljoufi, Arafat, Zhang, Chi, Ropa, James, Chang, Wennan, Palam, Lakshmi Reddy, Cooper, Scott, Ramdas, Baskar, Capitano, Maegan L., Broxmeyer, Hal E., Kapur, Reuben
Published in Blood (15.09.2022)
Published in Blood (15.09.2022)
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Abstract 2439: A semi-supervised deconvolution method for quantifying the composition and activity of tumor-infiltrating cell types
Chang, Wennan, Wan, Changlin, Sun, Yifan, Han, Yan, Qi, Siyuan, Lu, Xiongbin, Cao, Sha, Zhang, Chi
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Abstract 5095: Statistical modeling of transcriptional regulatory states in single-cell RNA-Seq data of tumor and infiltrated immune cells
Wan, Changlin, Chang, Wennan, Lu, Xiaoyu, Sun, Yifan, So, Kaman, Cao, Sha, Lu, Xiongbin, Zhang, Chi
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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A hierarchical hand motions recognition method based on IMU and sEMG sensors
Chang, Wennan, Dai, Lili, Sheng, Shili, Too Chuan Tan, Jeffrey, Zhu, Chi, Duan, Feng
Published in ROBIO : 2015 IEEE International Conference on Robotics and Biomimetics : 6-9 December 2015 (01.12.2015)
Published in ROBIO : 2015 IEEE International Conference on Robotics and Biomimetics : 6-9 December 2015 (01.12.2015)
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Abstract 2453: A new deconvolution algorithm for accurate assessing immune and stromal cell populations in mouse transcriptomic data
Lu, Xiaoyu, Tu, Szu-wei, Chang, Wennan, Huo, Yan, Wang, Pengcheng, Zhang, Yu, Zhang, Chi, Cao, Sha
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Design of an SSVEP-based BCI system with visual servo module for a service robot to execute multiple tasks
Shili Sheng, Peipei Song, Lingyue Xie, Zhendong Luo, Wennan Chang, Shurui Jiang, Haoyong Yu, Chi Zhu, Tan, Jeffrey Too Chuan, Feng Duan
Published in 2017 IEEE International Conference on Robotics and Automation (ICRA) (01.05.2017)
Published in 2017 IEEE International Conference on Robotics and Automation (ICRA) (01.05.2017)
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Community assessment of methods to deconvolve cellular composition from bulk gene expression
White, Brian S., de Reyniès, Aurélien, Newman, Aaron M., Waterfall, Joshua J., Lamb, Andrew, Petitprez, Florent, Lin, Yating, Yu, Rongshan, Guerrero-Gimenez, Martin E., Domanskyi, Sergii, Monaco, Gianni, Chung, Verena, Banerjee, Jineta, Derrick, Daniel, Valdeolivas, Alberto, Li, Haojun, Xiao, Xu, Wang, Shun, Zheng, Frank, Yang, Wenxian, Catania, Carlos A., Lang, Benjamin J., Bertus, Thomas J., Piermarocchi, Carlo, Caruso, Francesca P., Ceccarelli, Michele, Yu, Thomas, Guo, Xindi, Bletz, Julie, Coller, John, Maecker, Holden, Duault, Caroline, Shokoohi, Vida, Patel, Shailja, Liliental, Joanna E., Simon, Stockard, Saez-Rodriguez, Julio, Heiser, Laura M., Guinney, Justin, Gentles, Andrew J.
Published in Nature communications (27.08.2024)
Published in Nature communications (27.08.2024)
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