Analysis of RNA-Seq Data Using TopHat and Cufflinks
Ghosh, Sreya, Chan, Chon-Kit Kenneth
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2016)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2016)
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Journal Article
The pangenome of hexaploid bread wheat
Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon‐Kit Kenneth, Visendi, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline, Edwards, David
Published in The Plant journal : for cell and molecular biology (01.06.2017)
Published in The Plant journal : for cell and molecular biology (01.06.2017)
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Journal Article
Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus
Hurgobin, Bhavna, Golicz, Agnieszka A., Bayer, Philipp E., Chan, Chon‐Kit Kenneth, Tirnaz, Soodeh, Dolatabadian, Aria, Schiessl, Sarah V., Samans, Birgit, Montenegro, Juan D., Parkin, Isobel A. P., Pires, J. Chris, Chalhoub, Boulos, King, Graham J., Snowdon, Rod, Batley, Jacqueline, Edwards, David
Published in Plant biotechnology journal (01.07.2018)
Published in Plant biotechnology journal (01.07.2018)
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Journal Article
Assembly and comparison of two closely related Brassica napus genomes
Bayer, Philipp E., Hurgobin, Bhavna, Golicz, Agnieszka A., Chan, Chon‐Kit Kenneth, Yuan, Yuxuan, Lee, HueyTyng, Renton, Michael, Meng, Jinling, Li, Ruiyuan, Long, Yan, Zou, Jun, Bancroft, Ian, Chalhoub, Boulos, King, Graham J., Batley, Jacqueline, Edwards, David
Published in Plant biotechnology journal (01.12.2017)
Published in Plant biotechnology journal (01.12.2017)
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Journal Article
Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat
Lai, Kaitao, Lorenc, Michał T., Lee, Hong Ching, Berkman, Paul J., Bayer, Philipp Emanuel, Visendi, Paul, Ruperao, Pradeep, Fitzgerald, Timothy L., Zander, Manuel, Chan, Chon‐Kit Kenneth, Manoli, Sahana, Stiller, Jiri, Batley, Jacqueline, Edwards, David
Published in Plant biotechnology journal (01.01.2015)
Published in Plant biotechnology journal (01.01.2015)
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Journal Article
chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
Ruperao, Pradeep, Chan, Chon‐Kit Kenneth, Azam, Sarwar, Karafiátová, Miroslava, Hayashi, Satomi, Čížková, Jana, Saxena, Rachit K, imková, Hana, Song, Chi, Vrána, Jan, Chitikineni, Annapurna, Visendi, Paul, Gaur, Pooran M, Millán, Teresa, Singh, Karam B, Taran, Bunyamin, Wang, Jun, Batley, Jacqueline, Doležel, Jaroslav, Varshney, Rajeev K, Edwards, David
Published in Plant biotechnology journal (01.08.2014)
Published in Plant biotechnology journal (01.08.2014)
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Journal Article
Transcriptomic Changes in Coral Holobionts Provide Insights into Physiological Challenges of Future Climate and Ocean Change
Kaniewska, Paulina, Chan, Chon-Kit Kenneth, Kline, David, Ling, Edmund Yew Siang, Rosic, Nedeljka, Edwards, David, Hoegh-Guldberg, Ove, Dove, Sophie
Published in PloS one (28.10.2015)
Published in PloS one (28.10.2015)
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Journal Article
Unfolding the secrets of coral-algal symbiosis
Rosic, Nedeljka, Ling, Edmund Yew Siang, Chan, Chon-Kit Kenneth, Lee, Hong Ching, Kaniewska, Paulina, Edwards, David, Dove, Sophie, Hoegh-Guldberg, Ove
Published in The ISME Journal (17.03.2015)
Published in The ISME Journal (17.03.2015)
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Journal Article
High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus
Bayer, Philipp E., Ruperao, Pradeep, Mason, Annaliese S., Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K., Batley, Jacqueline, Edwards, David
Published in Theoretical and applied genetics (01.06.2015)
Published in Theoretical and applied genetics (01.06.2015)
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Journal Article
Databases for Wheat Genomics and Crop Improvement
Yuan, Yuxuan, Scheben, Armin, Chan, Chon-Kit Kenneth, Edwards, David
Published in Methods in molecular biology (Clifton, N.J.) (2017)
Published in Methods in molecular biology (Clifton, N.J.) (2017)
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BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data
Yuan, Yuxuan, Bayer, Philipp E, Scheben, Armin, Chan, Chon-Kit Kenneth, Edwards, David
Published in BMC bioinformatics (30.06.2017)
Published in BMC bioinformatics (30.06.2017)
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Journal Article
Genome assembly of the Australian black tiger shrimp (Penaeus monodon) reveals a novel fragmented IHHNV EVE sequence
Huerlimann, Roger, Cowley, Jeff A, Wade, Nicholas M, Wang, Yinan, Kasinadhuni, Naga, Chan, Chon-Kit Kenneth, Jabbari, Jafar S, Siemering, Kirby, Gordon, Lavinia, Tinning, Matthew, Montenegro, Juan D, Maes, Gregory E, Sellars, Melony J, Coman, Greg J, McWilliam, Sean, Zenger, Kyall R, Khatkar, Mehar S, Raadsma, Herman W, Donovan, Dallas, Krishna, Gopala, Jerry, Dean R
Published in G3 : genes - genomes - genetics (04.04.2022)
Published in G3 : genes - genomes - genetics (04.04.2022)
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Journal Article
A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference
Chan, Chon-Kit Kenneth, Rosic, Nedeljka, Lorenc, Michał T., Visendi, Paul, Lin, Meng, Kaniewska, Paulina, Ferguson, Brett J., Gresshoff, Peter M., Batley, Jacqueline, Edwards, David
Published in Functional & integrative genomics (01.03.2019)
Published in Functional & integrative genomics (01.03.2019)
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Journal Article
Daisychain: Search and Interactive Visualisation of Homologs in Genome Assemblies
Schliebs, Oliver, Chan, Chon-Kit Kenneth, Bayer, Philipp E., Petereit, Jakob, Singh, Ajit, Hassani-Pak, Keywan, Batley, Jacqueline, Edwards, David
Published in Agronomy (Basel) (01.12.2021)
Published in Agronomy (Basel) (01.12.2021)
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Journal Article
The pangenome of an agronomically important crop plant Brassica oleracea
Golicz, Agnieszka A, Bayer, Philipp E, Barker, Guy C, Edger, Patrick P, Kim, HyeRan, Martinez, Paula A, Chan, Chon Kit Kenneth, Severn-Ellis, Anita, McCombie, W Richard, Parkin, Isobel A P, Paterson, Andrew H, Pires, J Chris, Sharpe, Andrew G, Tang, Haibao, Teakle, Graham R, Town, Christopher D, Batley, Jacqueline, Edwards, David
Published in Nature communications (11.11.2016)
Published in Nature communications (11.11.2016)
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Journal Article
Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution
Lee, HueyTyng, Golicz, Agnieszka A, Bayer, Philipp E, Severn-Ellis, Anita A, Chan, Chon-Kit Kenneth, Batley, Jacqueline, Kendrick, Gary A, Edwards, David
Published in Journal of experimental botany (27.06.2018)
Published in Journal of experimental botany (27.06.2018)
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Journal Article
The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri)
Lee, HueyTyng, Golicz, Agnieszka A., Bayer, Philipp E., Jiao, Yuannian, Tang, Haibao, Paterson, Andrew H., Sablok, Gaurav, Krishnaraj, Rahul R., Chan, Chon-Kit Kenneth, Batley, Jacqueline, Kendrick, Gary A., Larkum, Anthony W.D., Ralph, Peter J., Edwards, David
Published in Plant physiology (Bethesda) (01.09.2016)
Published in Plant physiology (Bethesda) (01.09.2016)
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Journal Article
Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress
Rosic, Nedeljka, Kaniewska, Paulina, Chan, Chon-Kit Kenneth, Ling, Edmund Yew Siang, Edwards, David, Dove, Sophie, Hoegh-Guldberg, Ove
Published in BMC genomics (02.12.2014)
Published in BMC genomics (02.12.2014)
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