Predicting the functional effect of amino acid substitutions and indels
Choi, Yongwook, Sims, Gregory E, Murphy, Sean, Miller, Jason R, Chan, Agnes P
Published in PloS one (08.10.2012)
Published in PloS one (08.10.2012)
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Journal Article
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
Cheng, Chia‐Yi, Krishnakumar, Vivek, Chan, Agnes P., Thibaud‐Nissen, Françoise, Schobel, Seth, Town, Christopher D.
Published in The Plant journal : for cell and molecular biology (01.02.2017)
Published in The Plant journal : for cell and molecular biology (01.02.2017)
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Comparison of phasing strategies for whole human genomes
Choi, Yongwook, Chan, Agnes P, Kirkness, Ewen, Telenti, Amalio, Schork, Nicholas J
Published in PLoS genetics (05.04.2018)
Published in PLoS genetics (05.04.2018)
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Journal Article
Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
Espinoza, Josh L, Dupont, Chris L, O'Rourke, Aubrie, Beyhan, Sinem, Morales, Pavel, Spoering, Amy, Meyer, Kirsten J, Chan, Agnes P, Choi, Yongwook, Nierman, William C, Lewis, Kim, Nelson, Karen E
Published in PLoS computational biology (29.03.2021)
Published in PLoS computational biology (29.03.2021)
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Journal Article
Co-occurrence of Anaerobes in Human Chronic Wounds
Choi, Yongwook, Banerjee, Anirban, McNish, Sean, Couch, Kara S., Torralba, Manolito G., Lucas, Sarah, Tovchigrechko, Andrey, Madupu, Ramana, Yooseph, Shibu, Nelson, Karen E., Shanmugam, Victoria K., Chan, Agnes P.
Published in Microbial ecology (01.04.2019)
Published in Microbial ecology (01.04.2019)
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An ‘eFP‐Seq Browser’ for visualizing and exploring RNA sequencing data
Sullivan, Alexander, Purohit, Priyank K., Freese, Nowlan H., Pasha, Asher, Esteban, Eddi, Waese, Jamie, Wu, Alison, Chen, Michelle, Chin, Chih Y., Song, Richard, Watharkar, Sneha R., Chan, Agnes P., Krishnakumar, Vivek, Vaughn, Matthew W., Town, Chris, Loraine, Ann E., Provart, Nicholas J.
Published in The Plant journal : for cell and molecular biology (01.11.2019)
Published in The Plant journal : for cell and molecular biology (01.11.2019)
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Journal Article
Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire
Adams, Mark D, Wright, Meredith S, Karichu, James K, Venepally, Pratap, Fouts, Derrick E, Chan, Agnes P, Richter, Sandra S, Jacobs, Michael R, Bonomo, Robert A
Published in mBio (26.03.2019)
Published in mBio (26.03.2019)
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Journal Article
ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery
Krishnakumar, Vivek, Contrino, Sergio, Cheng, Chia-Yi, Belyaeva, Irina, Ferlanti, Erik S, Miller, Jason R, Vaughn, Matthew W, Micklem, Gos, Town, Christopher D, Chan, Agnes P
Published in Plant and cell physiology (01.01.2017)
Published in Plant and cell physiology (01.01.2017)
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Journal Article
Castor bean organelle genome sequencing and worldwide genetic diversity analysis
Rivarola, Maximo, Foster, Jeffrey T, Chan, Agnes P, Williams, Amber L, Rice, Danny W, Liu, Xinyue, Melake-Berhan, Admasu, Huot Creasy, Heather, Puiu, Daniela, Rosovitz, M J, Khouri, Hoda M, Beckstrom-Sternberg, Stephen M, Allan, Gerard J, Keim, Paul, Ravel, Jacques, Rabinowicz, Pablo D
Published in PloS one (07.07.2011)
Published in PloS one (07.07.2011)
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Journal Article
Uneven chromosome contraction and expansion in the maize genome
Bruggmann, Rémy, Bharti, Arvind K, Gundlach, Heidrun, Lai, Jinsheng, Young, Sarah, Pontaroli, Ana C, Wei, Fusheng, Haberer, Georg, Fuks, Galina, Du, Chunguang, Raymond, Christina, Estep, Matt C, Liu, Renyi, Bennetzen, Jeffrey L, Chan, Agnes P, Rabinowicz, Pablo D, Quackenbush, John, Barbazuk, W Brad, Wing, Rod A, Birren, Bruce, Nusbaum, Chad, Rounsley, Steve, Mayer, Klaus F X, Messing, Joachim
Published in Genome Research (01.10.2006)
Published in Genome Research (01.10.2006)
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Journal Article
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release
Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Jr, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Published in BMC biology (22.03.2005)
Published in BMC biology (22.03.2005)
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Journal Article
Insular Organization of Gene Space in Grass Genomes
Gottlieb, Andrea, Müller, Hans-Georg, Massa, Alicia N, Wanjugi, Humphrey, Deal, Karin R, You, Frank M, Xu, Xiangyang, Gu, Yong Q, Luo, Ming-Cheng, Anderson, Olin D, Chan, Agnes P, Rabinowicz, Pablo, Devos, Katrien M, Dvorak, Jan, Peddada, Shyamal D
Published in PloS one (11.01.2013)
Published in PloS one (11.01.2013)
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Journal Article
Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling
O'Rourke, Aubrie, Beyhan, Sinem, Choi, Yongwook, Morales, Pavel, Chan, Agnes P, Espinoza, Josh L, Dupont, Chris L, Meyer, Kirsten J, Spoering, Amy, Lewis, Kim, Nierman, William C, Nelson, Karen E
Published in Antimicrobial agents and chemotherapy (21.02.2020)
Published in Antimicrobial agents and chemotherapy (21.02.2020)
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Journal Article
Annotation of the Arabidopsis genome
Wortman, J.R, Haas, B.J, Hannick, L.I, Smith, R.K. Jr, Maiti, R, Ronning, C.M, Chan, A.P, Yu, C, Ayele, M, Whitelaw, C.A
Published in Plant physiology (Bethesda) (01.06.2003)
Published in Plant physiology (Bethesda) (01.06.2003)
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Journal Article
Draft genome sequence of the oilseed species Ricinus communis
Rabinowicz, Pablo D, Chan, Agnes P, Crabtree, Jonathan, Zhao, Qi, Lorenzi, Hernan, Orvis, Joshua, Puiu, Daniela, Melake-Berhan, Admasu, Jones, Kristine M, Redman, Julia, Chen, Grace, Cahoon, Edgar B, Gedil, Melaku, Stanke, Mario, Haas, Brian J, Wortman, Jennifer R, Fraser-Liggett, Claire M, Ravel, Jacques
Published in Nature biotechnology (01.09.2010)
Published in Nature biotechnology (01.09.2010)
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Journal Article
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
Chan, Agnes P, Sutton, Granger, DePew, Jessica, Krishnakumar, Radha, Choi, Yongwook, Huang, Xiao-Zhe, Beck, Erin, Harkins, Derek M, Kim, Maria, Lesho, Emil P, Nikolich, Mikeljon P, Fouts, Derrick E
Published in Genome Biology (21.07.2015)
Published in Genome Biology (21.07.2015)
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Journal Article
Three-Dimensional Ultrastructural Analysis of RNA Distribution within Germinal Granules of Xenopus
Kloc, Malgorzata, Dougherty, Matthew T., Bilinski, Szczepan, Chan, Agnes P., Brey, Eric, King, Mary Lou, Patrick, Charles W., Etkin, Laurence D.
Published in Developmental biology (01.01.2002)
Published in Developmental biology (01.01.2002)
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