The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer
Chaligné, Ronan, Popova, Tatiana, Mendoza-Parra, Marco-Antonio, Saleem, Mohamed-Ashick M, Gentien, David, Ban, Kristen, Piolot, Tristan, Leroy, Olivier, Mariani, Odette, Gronemeyer, Hinrich, Vincent-Salomon, Anne, Stern, Marc-Henri, Heard, Edith
Published in Genome research (01.04.2015)
Published in Genome research (01.04.2015)
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Journal Article
SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data
Persad, Sitara, Choo, Zi-Ning, Dien, Christine, Sohail, Noor, Masilionis, Ignas, Chaligné, Ronan, Nawy, Tal, Brown, Chrysothemis C., Sharma, Roshan, Pe’er, Itsik, Setty, Manu, Pe’er, Dana
Published in Nature biotechnology (01.12.2023)
Published in Nature biotechnology (01.12.2023)
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Journal Article
Application of high-throughput single-nucleus DNA sequencing in pancreatic cancer
Zhang, Haochen, Karnoub, Elias-Ramzey, Umeda, Shigeaki, Chaligné, Ronan, Masilionis, Ignas, McIntyre, Caitlin A., Sashittal, Palash, Hayashi, Akimasa, Zucker, Amanda, Mullen, Katelyn, Hong, Jungeui, Makohon-Moore, Alvin, Iacobuzio-Donahue, Christine A.
Published in Nature communications (10.02.2023)
Published in Nature communications (10.02.2023)
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Journal Article
Distinct metabolic requirements regulate B cell activation and germinal center responses
Sharma, Rahul, Smolkin, Ryan M., Chowdhury, Priyanka, Fernandez, Keith Conrad, Kim, Youngjun, Cols, Montserrat, Alread, William, Yen, Wei-Feng, Hu, Wei, Wang, Zhong-Min, Violante, Sara, Chaligné, Ronan, Li, Ming O., Cross, Justin R., Chaudhuri, Jayanta
Published in Nature immunology (01.08.2023)
Published in Nature immunology (01.08.2023)
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Journal Article
Hypermethylator Phenotype and Ectopic GIP Receptor in GNAS Mutation-Negative Somatotropinomas
Hage, Mirella, Chaligné, Ronan, Viengchareun, Say, Villa, Chiara, Salenave, Sylvie, Bouligand, Jérôme, Letouzé, Eric, Tosca, Lucie, Rouquette, Alexandra, Tachdjian, Gérard, Parker, Fabrice, Lombès, Marc, Lacroix, André, Gaillard, Stéphan, Chanson, Philippe, Kamenický, Peter
Published in The journal of clinical endocrinology and metabolism (01.05.2019)
Published in The journal of clinical endocrinology and metabolism (01.05.2019)
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Journal Article
A senescence-like cell-cycle arrest occurs during megakaryocytic maturation: implications for physiological and pathological megakaryocytic proliferation
Besancenot, Rodolphe, Chaligné, Ronan, Tonetti, Carole, Pasquier, Florence, Marty, Caroline, Lécluse, Yann, Vainchenker, William, Constantinescu, Stefan N, Giraudier, Stéphane
Published in PLoS biology (01.09.2010)
Published in PLoS biology (01.09.2010)
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Journal Article
Induction of myeloproliferative disorder and myelofibrosis by thrombopoietin receptor W515 mutants is mediated by cytosolic tyrosine 112 of the receptor
Pecquet, Christian, Staerk, Judith, Chaligné, Ronan, Goss, Valerie, Lee, Kimberly A., Zhang, Xiaowu, Rush, John, Van Hees, Joanne, Poirel, Hélène A., Scheiff, Jean-Marie, Vainchenker, William, Giraudier, Stéphane, Polakiewicz, Roberto D., Constantinescu, Stefan N.
Published in Blood (04.02.2010)
Published in Blood (04.02.2010)
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Journal Article
Evidence for MPL W515L/K mutations in hematopoietic stem cells in primitive myelofibrosis
Chaligné, Ronan, James, Chloé, Tonetti, Carole, Besancenot, Rodolphe, Le Couédic, Jean Pierre, Fava, Fanny, Mazurier, Fréderic, Godin, Isabelle, Maloum, Karim, Larbret, Frédéric, Lécluse, Yann, Vainchenker, William, Giraudier, Stéphane
Published in Blood (15.11.2007)
Published in Blood (15.11.2007)
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Journal Article
Adrenal GIPR expression and chromosome 19q13 microduplications in GIP-dependent Cushing's syndrome
Lecoq, Anne-Lise, Stratakis, Constantine A, Viengchareun, Say, Chaligné, Ronan, Tosca, Lucie, Deméocq, Vianney, Hage, Mirella, Berthon, Annabel, Faucz, Fabio R, Hanna, Patrick, Boyer, Hadrien-Gaël, Servant, Nicolas, Salenave, Sylvie, Tachdjian, Gérard, Adam, Clovis, Benhamo, Vanessa, Clauser, Eric, Guiochon-Mantel, Anne, Young, Jacques, Lombès, Marc, Bourdeau, Isabelle, Maiter, Dominique, Tabarin, Antoine, Bertherat, Jérôme, Lefebvre, Hervé, de Herder, Wouter, Louiset, Estelle, Lacroix, André, Chanson, Philippe, Bouligand, Jérôme, Kamenický, Peter
Published in JCI insight (21.09.2017)
Published in JCI insight (21.09.2017)
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Journal Article
Ligand-independent Thrombopoietin Mutant Receptor Requires Cell Surface Localization for Endogenous Activity
Marty, Caroline, Chaligné, Ronan, Lacout, Catherine, Constantinescu, Stefan N., Vainchenker, William, Villeval, Jean-Luc
Published in The Journal of biological chemistry (01.05.2009)
Published in The Journal of biological chemistry (01.05.2009)
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Journal Article
Smart-RRBS for single-cell methylome and transcriptome analysis
Gu, Hongcang, Raman, Ayush T., Wang, Xiaoxue, Gaiti, Federico, Chaligne, Ronan, Mohammad, Arman W., Arczewska, Aleksandra, Smith, Zachary D., Landau, Dan A., Aryee, Martin J., Meissner, Alexander, Gnirke, Andreas
Published in Nature protocols (01.08.2021)
Published in Nature protocols (01.08.2021)
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Journal Article
Ligand-Independent MPLW515L Activity Requires Cell Surface Localization
Marty, Caroline, Chaligné, Ronan, Lacout, Catherine, Constantinescu, Stefan N., Vainchenker, William, Villeval, Jean-Luc
Published in Blood (16.11.2008)
Published in Blood (16.11.2008)
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Journal Article
DNA methylation disruption reshapes the hematopoietic differentiation landscape
Izzo, Franco, Lee, Stanley C., Poran, Asaf, Chaligne, Ronan, Gaiti, Federico, Gross, Baptiste, Murali, Rekha R., Deochand, Sunil D., Ang, Chelston, Jones, Philippa Wyndham, Nam, Anna S., Kim, Kyu-Tae, Kothen-Hill, Steven, Schulman, Rafael C., Ki, Michelle, Lhoumaud, Priscillia, Skok, Jane A., Viny, Aaron D., Levine, Ross L., Kenigsberg, Ephraim, Abdel-Wahab, Omar, Landau, Dan A.
Published in Nature genetics (01.04.2020)
Published in Nature genetics (01.04.2020)
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Journal Article
Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis
Burdziak, Cassandra, Alonso-Curbelo, Direna, Walle, Thomas, Reyes, José, Barriga, Francisco M, Haviv, Doron, Xie, Yubin, Zhao, Zhen, Zhao, Chujun Julia, Chen, Hsuan-An, Chaudhary, Ojasvi, Masilionis, Ignas, Choo, Zi-Ning, Gao, Vianne, Luan, Wei, Wuest, Alexandra, Ho, Yu-Jui, Wei, Yuhong, Quail, Daniela F, Koche, Richard, Mazutis, Linas, Chaligné, Ronan, Nawy, Tal, Lowe, Scott W, Pe'er, Dana
Published in Science (American Association for the Advancement of Science) (12.05.2023)
Published in Science (American Association for the Advancement of Science) (12.05.2023)
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Journal Article
Interferon-Alpha Preferentially Targets JAK2V617F-Positive Rather Than Wild-Type Early Progenitor Cells in Myeloproliferative Disorders
Pasquier, Florence, Tonetti, Carole, Besancenot, Rodolphe, Cassinat, Bruno, Kiladjian, Jean-Jacques, Herault, Olivier, Rameau, Philippe, Lacout, Catherine, Villeval, Jean-Luc, Vainchenker, William, Chaligné, Ronan, Giraudier, Stephane
Published in Blood (20.11.2009)
Published in Blood (20.11.2009)
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Journal Article
Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL
Pastore, Alessandro, Gaiti, Federico, Lu, Sydney X., Brand, Ryan M., Kulm, Scott, Chaligne, Ronan, Gu, Hongcang, Huang, Kevin Y., Stamenova, Elena K., Béguelin, Wendy, Jiang, Yanwen, Schulman, Rafael C., Kim, Kyu-Tae, Alonso, Alicia, Allan, John N., Furman, Richard R., Gnirke, Andreas, Wu, Catherine J., Melnick, Ari M., Meissner, Alexander, Bernstein, Bradley E., Abdel-Wahab, Omar, Landau, Dan A.
Published in Nature communications (23.04.2019)
Published in Nature communications (23.04.2019)
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Journal Article
SOCS3 Promoter Methylation Is Not Involved in Primitive Myelofibrosis Megakaryocytic Spontaneous Growth
Chaligné, Ronan, Tonetti, Carole, Besancenot, Rodolphe, Kiladjian, Jean-Jacques, Socie, Gerard, Bordessoule, Dominique, Vainchenker, William, Giraudier, Stéphane
Published in Blood (16.11.2008)
Published in Blood (16.11.2008)
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Journal Article
Mapping genotypes to chromatin accessibility profiles in single cells
Izzo, Franco, Myers, Robert M., Ganesan, Saravanan, Mekerishvili, Levan, Kottapalli, Sanjay, Prieto, Tamara, Eton, Elliot O., Botella, Theo, Dunbar, Andrew J., Bowman, Robert L., Sotelo, Jesus, Potenski, Catherine, Mimitou, Eleni P., Stahl, Maximilian, El Ghaity-Beckley, Sebastian, Arandela, JoAnn, Raviram, Ramya, Choi, Daniel C., Hoffman, Ronald, Chaligné, Ronan, Abdel-Wahab, Omar, Smibert, Peter, Ghobrial, Irene M., Scandura, Joseph M., Marcellino, Bridget, Levine, Ross L., Landau, Dan A.
Published in Nature (London) (30.05.2024)
Published in Nature (London) (30.05.2024)
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