SCARLET: Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained Mutation Losses
Satas, Gryte, Zaccaria, Simone, Mon, Geoffrey, Raphael, Benjamin J.
Published in Cell systems (22.04.2020)
Published in Cell systems (22.04.2020)
Get full text
Journal Article
Dynamic Gene Regulatory Networks of Human Myeloid Differentiation
Ramirez, Ricardo N., El-Ali, Nicole C., Mager, Mikayla Anne, Wyman, Dana, Conesa, Ana, Mortazavi, Ali
Published in Cell systems (26.04.2017)
Published in Cell systems (26.04.2017)
Get full text
Journal Article
Defining and Manipulating B Cell Immunodominance Hierarchies to Elicit Broadly Neutralizing Antibody Responses against Influenza Virus
Amitai, Assaf, Sangesland, Maya, Barnes, Ralston M., Rohrer, Daniel, Lonberg, Nils, Lingwood, Daniel, Chakraborty, Arup K.
Published in Cell systems (16.12.2020)
Published in Cell systems (16.12.2020)
Get full text
Journal Article
Longitudinal RNA-Seq Analysis of Vertebrate Aging Identifies Mitochondrial Complex I as a Small-Molecule-Sensitive Modifier of Lifespan
Baumgart, Mario, Priebe, Steffen, Groth, Marco, Hartmann, Nils, Menzel, Uwe, Pandolfini, Luca, Koch, Philipp, Felder, Marius, Ristow, Michael, Englert, Christoph, Guthke, Reinhard, Platzer, Matthias, Cellerino, Alessandro
Published in Cell systems (24.02.2016)
Published in Cell systems (24.02.2016)
Get full text
Journal Article
MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities
Cao, Liu, Gurevich, Alexey, Alexander, Kelsey L., Naman, C. Benjamin, Leão, Tiago, Glukhov, Evgenia, Luzzatto-Knaan, Tal, Vargas, Fernando, Quinn, Robby, Bouslimani, Amina, Nothias, Louis Felix, Singh, Nitin K., Sanders, Jon G., Benitez, Rodolfo A.S., Thompson, Luke R., Hamid, Md-Nafiz, Morton, James T., Mikheenko, Alla, Shlemov, Alexander, Korobeynikov, Anton, Friedberg, Iddo, Knight, Rob, Venkateswaran, Kasthuri, Gerwick, William H., Gerwick, Lena, Dorrestein, Pieter C., Pevzner, Pavel A., Mohimani, Hosein
Published in Cell systems (18.12.2019)
Published in Cell systems (18.12.2019)
Get full text
Journal Article
Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv
Orchard, Peter, Kyono, Yasuhiro, Hensley, John, Kitzman, Jacob O., Parker, Stephen C.J.
Published in Cell systems (25.03.2020)
Published in Cell systems (25.03.2020)
Get full text
Journal Article
Mitochondrial Fission and Fusion Dynamics Generate Efficient, Robust, and Evenly Distributed Network Topologies in Budding Yeast Cells
Viana, Matheus P., Brown, Aidan I., Mueller, Irina A., Goul, Claire, Koslover, Elena F., Rafelski, Susanne M.
Published in Cell systems (25.03.2020)
Published in Cell systems (25.03.2020)
Get full text
Journal Article
Pulse-Chase Proteomics of the App Knockin Mouse Models of Alzheimer’s Disease Reveals that Synaptic Dysfunction Originates in Presynaptic Terminals
Hark, Timothy J., Rao, Nalini R., Castillon, Charlotte, Basta, Tamara, Smukowski, Samuel, Bao, Huan, Upadhyay, Arun, Bomba-Warczak, Ewa, Nomura, Toshihiro, O’Toole, Eileen T., Morgan, Garry P., Ali, Laith, Saito, Takashi, Guillermier, Christelle, Saido, Takaomi C., Steinhauser, Matthew L., Stowell, Michael H.B., Chapman, Edwin R., Contractor, Anis, Savas, Jeffrey N.
Published in Cell systems (17.02.2021)
Published in Cell systems (17.02.2021)
Get full text
Journal Article
In Situ Peroxidase Labeling and Mass-Spectrometry Connects Alpha-Synuclein Directly to Endocytic Trafficking and mRNA Metabolism in Neurons
Chung, Chee Yeun, Khurana, Vikram, Yi, Song, Sahni, Nidhi, Loh, Ken H., Auluck, Pavan K., Baru, Valeriya, Udeshi, Namrata D., Freyzon, Yelena, Carr, Steven A., Hill, David E., Vidal, Marc, Ting, Alice Y., Lindquist, Susan
Published in Cell systems (22.02.2017)
Published in Cell systems (22.02.2017)
Get full text
Journal Article
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity
Ambikan, Anoop T., Yang, Hong, Krishnan, Shuba, Svensson Akusjärvi, Sara, Gupta, Soham, Lourda, Magda, Sperk, Maike, Arif, Muhammad, Zhang, Cheng, Nordqvist, Hampus, Ponnan, Sivasankaran Munusamy, Sönnerborg, Anders, Treutiger, Carl Johan, O’Mahony, Liam, Mardinoglu, Adil, Benfeitas, Rui, Neogi, Ujjwal
Published in Cell Systems (17.08.2022)
Published in Cell Systems (17.08.2022)
Get full text
Journal Article
Web Resource
Mammalian Systems Biotechnology Reveals Global Cellular Adaptations in a Recombinant CHO Cell Line
Yusufi, Faraaz Noor Khan, Lakshmanan, Meiyappan, Ho, Ying Swan, Loo, Bernard Liat Wen, Ariyaratne, Pramila, Yang, Yuansheng, Ng, Say Kong, Tan, Tessa Rui Min, Yeo, Hock Chuan, Lim, Hsueh Lee, Ng, Sze Wai, Hiu, Ai Ping, Chow, Chung Ping, Wan, Corrine, Chen, Shuwen, Teo, Gavin, Song, Gao, Chin, Ju Xin, Ruan, Xiaoan, Sung, Ken Wing Kin, Hu, Wei-Shou, Yap, Miranda Gek Sim, Bardor, Muriel, Nagarajan, Niranjan, Lee, Dong-Yup
Published in Cell systems (24.05.2017)
Published in Cell systems (24.05.2017)
Get full text
Journal Article
Computationally Optimized SARS-CoV-2 MHC Class I and II Vaccine Formulations Predicted to Target Human Haplotype Distributions
Liu, Ge, Carter, Brandon, Bricken, Trenton, Jain, Siddhartha, Viard, Mathias, Carrington, Mary, Gifford, David K.
Published in Cell Systems (26.08.2020)
Published in Cell Systems (26.08.2020)
Get full text
Journal Article
Web Resource
Virtual screening for small-molecule pathway regulators by image-profile matching
Rohban, Mohammad H., Fuller, Ashley M., Tan, Ceryl, Goldstein, Jonathan T., Syangtan, Deepsing, Gutnick, Amos, DeVine, Ann, Nijsure, Madhura P., Rigby, Megan, Sacher, Joshua R., Corsello, Steven M., Peppler, Grace B., Bogaczynska, Marta, Boghossian, Andrew, Ciotti, Gabrielle E., Hands, Allison T., Mekareeya, Aroonroj, Doan, Minh, Gale, Jennifer P., Derynck, Rik, Turbyville, Thomas, Boerckel, Joel D., Singh, Shantanu, Kiessling, Laura L., Schwarz, Thomas L., Varelas, Xaralabos, Wagner, Florence F., Kafri, Ran, Eisinger-Mathason, T.S. Karin, Carpenter, Anne E.
Published in Cell systems (21.09.2022)
Published in Cell systems (21.09.2022)
Get full text
Journal Article
A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS
Heusel, Moritz, Frank, Max, Köhler, Mario, Amon, Sabine, Frommelt, Fabian, Rosenberger, George, Bludau, Isabell, Aulakh, Simran, Linder, Monika I., Liu, Yansheng, Collins, Ben C., Gstaiger, Matthias, Kutay, Ulrike, Aebersold, Ruedi
Published in Cell systems (26.02.2020)
Published in Cell systems (26.02.2020)
Get full text
Journal Article
Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency
Rulands, Steffen, Lee, Heather J., Clark, Stephen J., Angermueller, Christof, Smallwood, Sébastien A., Krueger, Felix, Mohammed, Hisham, Dean, Wendy, Nichols, Jennifer, Rugg-Gunn, Peter, Kelsey, Gavin, Stegle, Oliver, Simons, Benjamin D., Reik, Wolf
Published in Cell systems (25.07.2018)
Published in Cell systems (25.07.2018)
Get full text
Journal Article
Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
Gerbin, Kaytlyn A., Grancharova, Tanya, Donovan-Maiye, Rory M., Hendershott, Melissa C., Anderson, Helen G., Brown, Jackson M., Chen, Jianxu, Dinh, Stephanie Q., Gehring, Jamie L., Johnson, Gregory R., Lee, HyeonWoo, Nath, Aditya, Nelson, Angelique M., Sluzewski, M. Filip, Viana, Matheus P., Yan, Calysta, Zaunbrecher, Rebecca J., Cordes Metzler, Kimberly R., Gaudreault, Nathalie, Knijnenburg, Theo A., Rafelski, Susanne M., Theriot, Julie A., Gunawardane, Ruwanthi N.
Published in Cell systems (16.06.2021)
Published in Cell systems (16.06.2021)
Get full text
Journal Article
Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer
Schuh, Lea, Saint-Antoine, Michael, Sanford, Eric M., Emert, Benjamin L., Singh, Abhyudai, Marr, Carsten, Raj, Arjun, Goyal, Yogesh
Published in Cell systems (22.04.2020)
Published in Cell systems (22.04.2020)
Get full text
Journal Article