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Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations
Zheng, Wei, Zhang, Chengxin, Li, Yang, Pearce, Robin, Bell, Eric W., Zhang, Yang
Published in Cell reports methods (26.07.2021)
Published in Cell reports methods (26.07.2021)
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hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
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Published in Cell reports methods (26.06.2023)
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Graph embedding and Gaussian mixture variational autoencoder network for end-to-end analysis of single-cell RNA sequencing data
Xu, Junlin, Xu, Jielin, Meng, Yajie, Lu, Changcheng, Cai, Lijun, Zeng, Xiangxiang, Nussinov, Ruth, Cheng, Feixiong
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Published in Cell reports methods (23.01.2023)
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DIPA-CRISPR is a simple and accessible method for insect gene editing
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Published in Cell reports methods (23.05.2022)
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A mixture-of-experts deep generative model for integrated analysis of single-cell multiomics data
Minoura, Kodai, Abe, Ko, Nam, Hyunha, Nishikawa, Hiroyoshi, Shimamura, Teppei
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Published in Cell reports methods (27.09.2021)
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Super-resolved live-cell imaging using random illumination microscopy
Mangeat, Thomas, Labouesse, Simon, Allain, Marc, Negash, Awoke, Martin, Emmanuel, Guénolé, Aude, Poincloux, Renaud, Estibal, Claire, Bouissou, Anaïs, Cantaloube, Sylvain, Vega, Elodie, Li, Tong, Rouvière, Christian, Allart, Sophie, Keller, Debora, Debarnot, Valentin, Wang, Xia Bo, Michaux, Grégoire, Pinot, Mathieu, Le Borgne, Roland, Tournier, Sylvie, Suzanne, Magali, Idier, Jérome, Sentenac, Anne
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Published in Cell reports methods (24.05.2021)
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Rapid and sensitive one-tube detection of mpox virus using RPA-coupled CRISPR-Cas12 assay
Zhao, Fei, Hu, Yamei, Fan, Zhangling, Huang, Baoying, Wei, Liang, Xie, Yu, Huang, Yu, Mei, Shan, Wang, Liming, Wang, Lingwa, Ai, Bin, Fang, Jugao, Liang, Chen, Xu, Fengwen, Tan, Wenjie, Guo, Fei
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Published in Cell reports methods (23.10.2023)
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Liver three-dimensional cellular models for high-throughput chemical testing
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Published in Cell reports methods (27.03.2023)
Published in Cell reports methods (27.03.2023)
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Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities
Zampieri, Guido, Campanaro, Stefano, Angione, Claudio, Treu, Laura
Published in Cell reports methods (23.01.2023)
Published in Cell reports methods (23.01.2023)
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Discovery and validation of human genomic safe harbor sites for gene and cell therapies
Aznauryan, Erik, Yermanos, Alexander, Kinzina, Elvira, Devaux, Anna, Kapetanovic, Edo, Milanova, Denitsa, Church, George M., Reddy, Sai T.
Published in Cell reports methods (24.01.2022)
Published in Cell reports methods (24.01.2022)
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Effective cryopreservation of human brain tissue and neural organoids
Xue, Weiwei, Li, Huijuan, Xu, Jinhong, Yu, Xiao, Liu, Linlin, Liu, Huihui, Zhao, Rui, Shao, Zhicheng
Published in Cell reports methods (20.05.2024)
Published in Cell reports methods (20.05.2024)
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Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies
Usyk, Mykhaylo, Peters, Brandilyn A., Karthikeyan, Smruthi, McDonald, Daniel, Sollecito, Christopher C., Vazquez-Baeza, Yoshiki, Shaffer, Justin P., Gellman, Marc D., Talavera, Gregory A., Daviglus, Martha L., Thyagarajan, Bharat, Knight, Rob, Qi, Qibin, Kaplan, Robert, Burk, Robert D.
Published in Cell reports methods (23.01.2023)
Published in Cell reports methods (23.01.2023)
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Enhancing immuno-oncology investigations through multidimensional decoding of tumor microenvironment with IOBR 2.0
Zeng, Dongqiang, Fang, Yiran, Qiu, Wenjun, Luo, Peng, Wang, Shixiang, Shen, Rongfang, Gu, Wenchao, Huang, Xiatong, Mao, Qianqian, Wang, Gaofeng, Lai, Yonghong, Rong, Guangda, Xu, Xi, Shi, Min, Wu, Zuqiang, Yu, Guangchuang, Liao, Wangjun
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Published in Cell reports methods (16.12.2024)
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Optimization and validation of CAR transduction into human primary NK cells using CRISPR and AAV
Naeimi Kararoudi, Meisam, Likhite, Shibi, Elmas, Ezgi, Yamamoto, Kenta, Schwartz, Maura, Sorathia, Kinnari, de Souza Fernandes Pereira, Marcelo, Sezgin, Yasemin, Devine, Raymond D., Lyberger, Justin M., Behbehani, Gregory K., Chakravarti, Nitin, Moriarity, Branden S., Meyer, Kathrin, Lee, Dean A.
Published in Cell reports methods (20.06.2022)
Published in Cell reports methods (20.06.2022)
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A size-exclusion-based approach for purifying extracellular vesicles from human plasma
Vanderboom, Patrick M., Dasari, Surendra, Ruegsegger, Gregory N., Pataky, Mark W., Lucien, Fabrice, Heppelmann, Carrie Jo, Lanza, Ian R., Nair, K. Sreekumaran
Published in Cell reports methods (26.07.2021)
Published in Cell reports methods (26.07.2021)
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High-throughput identification of autoantibodies that target the human exoproteome
Wang, Eric Y., Dai, Yile, Rosen, Connor E., Schmitt, Monica M., Dong, Mei X., Ferré, Elise M.N., Liu, Feimei, Yang, Yi, González-Hernández, Jaime A., Meffre, Eric, Hinchcliff, Monique, Koumpouras, Fotios, Lionakis, Michail S., Ring, Aaron M.
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Published in Cell reports methods (28.02.2022)
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An integrated toolbox to profile macrophage immunometabolism
Verberk, Sanne G.S., de Goede, Kyra E., Gorki, Friederike S., van Dierendonck, Xanthe A.M.H., Argüello, Rafael J., Van den Bossche, Jan
Published in Cell reports methods (25.04.2022)
Published in Cell reports methods (25.04.2022)
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A fully automated FAIMS-DIA mass spectrometry-based proteomic pipeline
Reilly, Luke, Lara, Erika, Ramos, Daniel, Li, Ziyi, Pantazis, Caroline B., Stadler, Julia, Santiana, Marianita, Roberts, Jessica, Faghri, Faraz, Hao, Ying, Nalls, Mike A., Narayan, Priyanka, Liu, Yansheng, Singleton, Andrew B., Cookson, Mark R., Ward, Michael E., Qi, Yue A.
Published in Cell reports methods (23.10.2023)
Published in Cell reports methods (23.10.2023)
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