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DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
McGinnis, Christopher S., Murrow, Lyndsay M., Gartner, Zev J.
Published in Cell systems (24.04.2019)
Published in Cell systems (24.04.2019)
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ProGen2: Exploring the boundaries of protein language models
Nijkamp, Erik, Ruffolo, Jeffrey A., Weinstein, Eli N., Naik, Nikhil, Madani, Ali
Published in Cell systems (15.11.2023)
Published in Cell systems (15.11.2023)
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Large-Scale Multi-omic Analysis of COVID-19 Severity
Overmyer, Katherine A., Shishkova, Evgenia, Miller, Ian J., Balnis, Joseph, Bernstein, Matthew N., Peters-Clarke, Trenton M., Meyer, Jesse G., Quan, Qiuwen, Muehlbauer, Laura K., Trujillo, Edna A., He, Yuchen, Chopra, Amit, Chieng, Hau C., Tiwari, Anupama, Judson, Marc A., Paulson, Brett, Brademan, Dain R., Zhu, Yunyun, Serrano, Lia R., Linke, Vanessa, Drake, Lisa A., Adam, Alejandro P., Schwartz, Bradford S., Singer, Harold A., Swanson, Scott, Mosher, Deane F., Stewart, Ron, Coon, Joshua J., Jaitovich, Ariel
Published in Cell systems (20.01.2021)
Published in Cell systems (20.01.2021)
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Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection
Messner, Christoph B., Demichev, Vadim, Wendisch, Daniel, Michalick, Laura, White, Matthew, Freiwald, Anja, Textoris-Taube, Kathrin, Vernardis, Spyros I., Egger, Anna-Sophia, Kreidl, Marco, Ludwig, Daniela, Kilian, Christiane, Agostini, Federica, Zelezniak, Aleksej, Thibeault, Charlotte, Pfeiffer, Moritz, Hippenstiel, Stefan, Hocke, Andreas, von Kalle, Christof, Campbell, Archie, Hayward, Caroline, Porteous, David J., Marioni, Riccardo E., Langenberg, Claudia, Lilley, Kathryn S., Kuebler, Wolfgang M., Mülleder, Michael, Drosten, Christian, Suttorp, Norbert, Witzenrath, Martin, Kurth, Florian, Sander, Leif Erik, Ralser, Markus
Published in Cell systems (22.07.2020)
Published in Cell systems (22.07.2020)
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Artificial intelligence for proteomics and biomarker discovery
Mann, Matthias, Kumar, Chanchal, Zeng, Wen-Feng, Strauss, Maximilian T
Published in Cell systems (18.08.2021)
Published in Cell systems (18.08.2021)
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The Molecular Signatures Database Hallmark Gene Set Collection
Liberzon, Arthur, Birger, Chet, Thorvaldsdóttir, Helga, Ghandi, Mahmoud, Mesirov, Jill P., Tamayo, Pablo
Published in Cell systems (23.12.2015)
Published in Cell systems (23.12.2015)
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Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Rao, Suhas S.P., Huntley, Miriam H., Lander, Eric S., Aiden, Erez Lieberman
Published in Cell systems (01.07.2016)
Published in Cell systems (01.07.2016)
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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
Ding, Li, Felau, Ina, Sofia, Heidi J., Zenklusen, Jean C., Zhang, Jiashan (Julia), Lolla, Laxmi, Pihl, Todd, Frazer, Scott, Kim, Jaegil, Chambwe, Nyasha, Liang, Han, Ryan, Michael, Heins, Zachary J., La, Konnor, Schultz, Nikolaus, Taylor, Barry S., Wang, Jioajiao, Parker, Wilkerson, Matthew D., Tse, Kane, Cibulskis, Carrie, Gabriel, Stacey B., Balu, Saianand, Meng, Shaowu, Skelly, Tara, Soloway, Matthew G., Laird, Peter W., Chang, Kyle, Korchina, Viktoriya, Miller, Christopher A., Crain, Daniel, Curley, Erin, Morris, Scott, Costello, Tony, Longatto-Filho, Adhemar, Scapulatempo-Neto, Cristovam, Silveira, Henrique C.S., Singh, Rosy, Tavobilov, Mikhail, Warnick, Ronald, Feltmate, Colleen, Kibel, Adam, Ostrom, Quinn T., Shimmel, Kristen, Wolinsky, Yingli, Sloan, Andrew E., Kvecher, Leonid, Somiari, Stella, Vicha, Ales, Su, Tao, Signoretti, Sabina, Sica, Gabriel, Hartmann, Arndt, Edenfield, W. Jeffrey, Giné, Eva, Stepa, Serghei, Hoon, Dave, Beuschlein, Felix, Giama, Nasra, Moser, Catherine, O’Brien, Daniel, Smallridge, Robert, Thompson, R. Houston, Czerniak, Bogdan, Troncoso, Patricia, Jakrot, Valerie, Long, Georgina, Tien, Nguyen Viet, Broudy, Thomas, Kebebew, Electron, Pacak, Karel, Worrell, Robert, Parfitt, Jeremy, Sekhon, Harman, Thomas, George, Rintoul, Robert C., Antenucci, Anna, Marino, Mirella, Brewer, Cathy, Liptay, Michael J., Pool, Mark, Seder, Christopher W., Omberg, Larsson, Gaudio, Eugenio, Bell, Sue, Hansen, Paul, Asa, Sylvia L., Phillips, Joanna, Prados, Michael, Mannelli, Massimo, Adebamowo, Clement, Kemp, Rafael, Swisher, Elizabeth, Robinson, Bruce, Bowman, Rayleen, Hooke, Jeffrey A., Govindan, Ramaswamy, Heath, Sharon, Lee, Jung Il, Mariamidze, Armaz
Published in Cell systems (28.03.2018)
Published in Cell systems (28.03.2018)
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Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
Durand, Neva C., Robinson, James T., Shamim, Muhammad S., Machol, Ido, Mesirov, Jill P., Lander, Eric S., Aiden, Erez Lieberman
Published in Cell systems (01.07.2016)
Published in Cell systems (01.07.2016)
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A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure
Baron, Maayan, Veres, Adrian, Wolock, Samuel L., Faust, Aubrey L., Gaujoux, Renaud, Vetere, Amedeo, Ryu, Jennifer Hyoje, Wagner, Bridget K., Shen-Orr, Shai S., Klein, Allon M., Melton, Douglas A., Yanai, Itai
Published in Cell systems (26.10.2016)
Published in Cell systems (26.10.2016)
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A Single-Cell Transcriptome Atlas of the Human Pancreas
Muraro, Mauro J., Dharmadhikari, Gitanjali, Grün, Dominic, Groen, Nathalie, Dielen, Tim, Jansen, Erik, van Gurp, Leon, Engelse, Marten A., Carlotti, Francoise, de Koning, Eelco J.P., van Oudenaarden, Alexander
Published in Cell systems (26.10.2016)
Published in Cell systems (26.10.2016)
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Systems Biology of Cancer Metastasis
Suhail, Yasir, Cain, Margo P., Vanaja, Kiran, Kurywchak, Paul A., Levchenko, Andre, Kalluri, Raghu, Kshitiz
Published in Cell systems (28.08.2019)
Published in Cell systems (28.08.2019)
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Fast and Flexible Protein Design Using Deep Graph Neural Networks
Strokach, Alexey, Becerra, David, Corbi-Verge, Carles, Perez-Riba, Albert, Kim, Philip M.
Published in Cell systems (21.10.2020)
Published in Cell systems (21.10.2020)
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Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data
Robinson, James T., Turner, Douglass, Durand, Neva C., Thorvaldsdóttir, Helga, Mesirov, Jill P., Aiden, Erez Lieberman
Published in Cell systems (28.02.2018)
Published in Cell systems (28.02.2018)
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Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
Berger, Ashton C., Hurlin, Peter J., Eisenman, Robert N., Felau, Ina, Zhang, Jiashan (Julia), Kim, Jaegil, Kramer, Roger, Reynolds, Sheila, Shmulevich, Ilya, Thorsson, Vesteinn, Liang, Han, Lu, Yiling, Ng, Kwok-Shing, Gao, Jianjiong, Heins, Zachary J., La, Konnor, Schultz, Nikolaus, Taylor, Barry S., Bowlby, Reanne, Lee, Darlene, Mungall, Karen, Schein, Jacqueline E., Schumacher, Steven E., Hoyle, Alan P., Perou, Amy H., Skelly, Tara, Chang, Kyle, Shinbrot, Eve, Wang, Min, Xi, Liu, Schmidt, Heather K., Curley, Erin, Gardner, Johanna, Morris, Scott, Paulauskis, Joseph, Longatto-Filho, Adhemar, Kibel, Adam, Devine, Karen, Ostrom, Quinn T., Shimmel, Kristen, Harr, Jodi, Zach, Leigh Anne, Kvecher, Leonid, Latour, Mathieu, Têtu, Bernard, McGraw, Mary, Chen, Amy, Sica, Gabriel, Van Meir, Erwin G., Calatozzolo, Chiara, Mattei, Luca, Pollo, Bianca, Houck, John, Bueno, Raphael, Girard, Nicolas, Aymerich, Marta, Stepa, Serghei, Hoon, Dave, Beuschlein, Felix, Chandan, Vishal, Moser, Catherine, O’Brien, Daniel, Thompson, R. Houston, Torbenson, Michael, Behrens, Carmen, Tsao, Anne, Jakrot, Valerie, Lee, Kenneth, Spillane, Andrew, Chan, Timothy A., Park, Joong-Won, Kebebew, Electron, Thomas, George, Facciolo, Francesco, Piché, Alain, Pennell, Nathan A., Morrison, Carl, Seder, Christopher W., Bragazzi, Maria Consiglia, Gaudio, Eugenio, Becker, Karl-Friedrich, Bell, Sue, Hilty, Joe, Grizzle, William E., Porten, Sima, Asa, Sylvia L., Sauter, Guido, Schlomm, Thorsten, Bathe, Oliver, Phillips, Joanna, Prados, Michael, Sifri, Suzanne, Forgie, Ian, Mannelli, Massimo, Herold-Mende, Christel, Landrum, Lisa, Kemp, Rafael, Rathmell, W. Kimryn, Fantacone-Campbell, J. Leigh, Mariamidze, Armaz
Published in Cell systems (28.03.2018)
Published in Cell systems (28.03.2018)
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