Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data
Qin, Tingting, Lee, Christopher, Li, Shiting, Cavalcante, Raymond G, Orchard, Peter, Yao, Heming, Zhang, Hanrui, Wang, Shuze, Patil, Snehal, Boyle, Alan P, Sartor, Maureen A
Published in Genome Biology (26.04.2022)
Published in Genome Biology (26.04.2022)
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Journal Article
Early-life social experience affects offspring DNA methylation and later life stress phenotype
Laubach, Zachary M., Greenberg, Julia R., Turner, Julie W., Montgomery, Tracy M., Pioon, Malit O., Sawdy, Maggie A., Smale, Laura, Cavalcante, Raymond G., Padmanabhan, Karthik R., Lalancette, Claudia, vonHoldt, Bridgett, Faulk, Christopher D., Dolinoy, Dana C., Holekamp, Kay E., Perng, Wei
Published in Nature communications (20.07.2021)
Published in Nature communications (20.07.2021)
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Journal Article
Mediation effects of DNA methylation and hydroxymethylation on birth outcomes after prenatal per- and polyfluoroalkyl substances (PFAS) exposure in the Michigan mother-infant Pairs cohort
Petroff, Rebekah L, Cavalcante, Raymond G, Langen, Elizabeth S, Dolinoy, Dana C, Padmanabhan, Vasantha, Goodrich, Jaclyn M
Published in Clinical epigenetics (24.03.2023)
Published in Clinical epigenetics (24.03.2023)
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Journal Article
Tissue and sex-specific programming of DNA methylation by perinatal lead exposure: implications for environmental epigenetics studies
Svoboda, Laurie K., Neier, Kari, Wang, Kai, Cavalcante, Raymond G., Rygiel, Christine A., Tsai, Zing, Jones, Tamara R., Liu, Siyu, Goodrich, Jaclyn M., Lalancette, Claudia, Colacino, Justin A., Sartor, Maureen A., Dolinoy, Dana C.
Published in Epigenetics (03.10.2021)
Published in Epigenetics (03.10.2021)
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Journal Article
Differences in the DNA methylome of T cells in adults with asthma of varying severity
Liao, Yixuan, Cavalcante, Raymond G, Waller, Jonathan B, Deng, Furong, Scruggs, Anne M, Huang, Yvonne J, Atasoy, Ulus, Chen, Yahong, Huang, Steven K
Published in Clinical epigenetics (08.10.2024)
Published in Clinical epigenetics (08.10.2024)
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Journal Article
Developmental exposures to common environmental contaminants, DEHP and lead, alter adult brain and blood hydroxymethylation in mice
Petroff, Rebekah L, Cavalcante, Raymond G, Colacino, Justin A, Goodrich, Jaclyn M, Jones, Tamara R, Lalancette, Claudia, Morgan, Rachel K, Neier, Kari, Perera, Bambarendage P U, Rygiel, Christine A, Svoboda, Laurie K, Wang, Kai, Sartor, Maureen A, Dolinoy, Dana C
Published in Frontiers in cell and developmental biology (13.06.2023)
Published in Frontiers in cell and developmental biology (13.06.2023)
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Journal Article
CCN6 Suppresses Metaplastic Breast Carcinoma by Antagonizing Wnt/β-Catenin Signaling to Inhibit EZH2-Driven EMT
Gonzalez, Maria E, Brophy, Bryce, Eido, Ahmad, Leonetti, Adele E, Djomehri, Sabra I, Augimeri, Giuseppina, Carruthers, Nicholas J, Cavalcante, Raymond G, Giordano, Francesca, Andò, Sebastiano, Nesvizhskii, Alexey I, Fearon, Eric R, Kleer, Celina G
Published in Cancer research (Chicago, Ill.) (01.10.2024)
Published in Cancer research (Chicago, Ill.) (01.10.2024)
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Journal Article
Longitudinal Effects of Developmental Bisphenol A Exposure on Epigenome-Wide DNA Hydroxymethylation at Imprinted Loci in Mouse Blood
Kochmanski, Joseph J, Marchlewicz, Elizabeth H, Cavalcante, Raymond G, Perera, Bambarendage P U, Sartor, Maureen A, Dolinoy, Dana C
Published in Environmental health perspectives (01.07.2018)
Published in Environmental health perspectives (01.07.2018)
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Journal Article
Integrating DNA Methylation and Hydroxymethylation Data with the Mint Pipeline
Cavalcante, Raymond G, Patil, Snehal, Park, Yongseok, Rozek, Laura S, Sartor, Maureen A
Published in Cancer research (Chicago, Ill.) (01.11.2017)
Published in Cancer research (Chicago, Ill.) (01.11.2017)
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Journal Article
Effect of concentration and duration of particulate matter exposure on the transcriptome and DNA methylome of bronchial epithelial cells
Huang, Steven K, Tripathi, Priya, Koneva, Lada A, Cavalcante, Raymond G, Craig, Nathan, Scruggs, Anne M, Sartor, Maureen A, Deng, Furong, Chen, Yahong
Published in Environmental epigenetics (2021)
Published in Environmental epigenetics (2021)
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Journal Article
Broad-Enrich: functional interpretation of large sets of broad genomic regions
Cavalcante, Raymond G, Lee, Chee, Welch, Ryan P, Patil, Snehal, Weymouth, Terry, Scott, Laura J, Sartor, Maureen A
Published in Bioinformatics (01.09.2014)
Published in Bioinformatics (01.09.2014)
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Journal Article
Whole-genome CpG-resolution DNA Methylation Profiling of HNSCC Reveals Distinct Mechanisms of Carcinogenesis for Fine-scale HPV+ Cancer Subtypes
Qin, Tingting, Li, Shiting, Henry, Leanne E., Chou, Elysia, Cavalcante, Raymond G., Garb, Bailey F., D'Silva, Nisha J., Rozek, Laura S., Sartor, Maureen A.
Published in Cancer research communications (30.08.2023)
Published in Cancer research communications (30.08.2023)
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Journal Article
5-Hydroxymethylation highlights the heterogeneity in keratinization and cell junctions in head and neck cancers
Liu, Siyu, de Medeiros, Marcell Costa, Fernandez, Evan M, Zarins, Katie R, Cavalcante, Raymond G, Qin, Tingting, Wolf, Gregory T, Figueroa, Maria E, D'Silva, Nisha J, Rozek, Laura S, Sartor, Maureen A
Published in Clinical epigenetics (17.11.2020)
Published in Clinical epigenetics (17.11.2020)
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Journal Article
Perinatal DEHP exposure induces sex- and tissue-specific DNA methylation changes in both juvenile and adult mice
Liu, Siyu, Wang, Kai, Svoboda, Laurie K, Rygiel, Christine A, Neier, Kari, Jones, Tamara R, Cavalcante, Raymond G, Colacino, Justin A, Dolinoy, Dana C, Sartor, Maureen A
Published in Environmental epigenetics (2021)
Published in Environmental epigenetics (2021)
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Journal Article
Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions
Lee, Christopher T, Cavalcante, Raymond G, Lee, Chee, Qin, Tingting, Patil, Snehal, Wang, Shuze, Tsai, Zing T Y, Boyle, Alan P, Sartor, Maureen A
Published in NAR genomics and bioinformatics (01.03.2020)
Published in NAR genomics and bioinformatics (01.03.2020)
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