Processing strategies and software solutions for data-independent acquisition in mass spectrometry
Bilbao, Aivett, Varesio, Emmanuel, Luban, Jeremy, Strambio-De-Castillia, Caterina, Hopfgartner, Gérard, Müller, Markus, Lisacek, Frédérique
Published in Proteomics (Weinheim) (01.03.2015)
Published in Proteomics (Weinheim) (01.03.2015)
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Evidence for biphasic uncoating during HIV-1 infection from a novel imaging assay
Xu, Hongzhan, Franks, Tamera, Gibson, Gregory, Huber, Kelly, Rahm, Nadia, Strambio De Castillia, Caterina, Luban, Jeremy, Aiken, Christopher, Watkins, Simon, Sluis-Cremer, Nicolas, Ambrose, Zandrea
Published in Retrovirology (09.07.2013)
Published in Retrovirology (09.07.2013)
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MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community
Kunis, Susanne, Hänsch, Sebastian, Schmidt, Christian, Wong, Frances, Strambio-De-Castillia, Caterina, Weidtkamp-Peters, Stefanie
Published in Nature methods (01.12.2021)
Published in Nature methods (01.12.2021)
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Journal Article
The Use of Variable Q1 Isolation Windows Improves Selectivity in LC–SWATH–MS Acquisition
Zhang, Ying, Bilbao, Aivett, Bruderer, Tobias, Luban, Jeremy, Strambio-De-Castillia, Caterina, Lisacek, Frédérique, Hopfgartner, Gérard, Varesio, Emmanuel
Published in Journal of proteome research (02.10.2015)
Published in Journal of proteome research (02.10.2015)
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QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy
Boehm, Ulrike, Nelson, Glyn, Brown, Claire M., Bagley, Steve, Bajcsy, Peter, Bischof, Johanna, Dauphin, Aurelien, Dobbie, Ian M., Eriksson, John E., Faklaris, Orestis, Fernandez-Rodriguez, Julia, Ferrand, Alexia, Gelman, Laurent, Gheisari, Ali, Hartmann, Hella, Kukat, Christian, Laude, Alex, Mitkovski, Miso, Munck, Sebastian, North, Alison J., Rasse, Tobias M., Resch-Genger, Ute, Schuetz, Lucas C., Seitz, Arne, Strambio-De-Castillia, Caterina, Swedlow, Jason R., Nitschke, Roland
Published in Nature methods (01.12.2021)
Published in Nature methods (01.12.2021)
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The DHODH inhibitor PTC299 arrests SARS-CoV-2 replication and suppresses induction of inflammatory cytokines
Luban, Jeremy, Sattler, Rachel A., Mühlberger, Elke, Graci, Jason D., Cao, Liangxian, Weetall, Marla, Trotta, Christopher, Colacino, Joseph M., Bavari, Sina, Strambio-De-Castillia, Caterina, Suder, Ellen L., Wang, Yetao, Soloveva, Veronica, Cintron-Lue, Katherine, Naryshkin, Nikolai A., Pykett, Mark, Welch, Ellen M., O’Keefe, Kylie, Kong, Ronald, Goodwin, Elizabeth, Jacobson, Allan, Paessler, Slobodan, Peltz, Stuart W.
Published in Virus research (15.01.2021)
Published in Virus research (15.01.2021)
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Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Hammer, Mathias, Huisman, Maximiliaan, Rigano, Alessandro, Boehm, Ulrike, Chambers, James J., Gaudreault, Nathalie, North, Alison J., Pimentel, Jaime A., Sudar, Damir, Bajcsy, Peter, Brown, Claire M., Corbett, Alexander D., Faklaris, Orestis, Lacoste, Judith, Laude, Alex, Nelson, Glyn, Nitschke, Roland, Farzam, Farzin, Smith, Carlas S., Grunwald, David, Strambio-De-Castillia, Caterina
Published in Nature methods (01.12.2021)
Published in Nature methods (01.12.2021)
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MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text
Ryan, Joel, Pengo, Thomas, Rigano, Alex, Llopis, Paula Montero, Itano, Michelle S., Cameron, Lisa A., Marqués, Guillermo, Strambio-De-Castillia, Caterina, Sanders, Mark A., Brown, Claire M.
Published in Nature methods (01.12.2021)
Published in Nature methods (01.12.2021)
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Journal Article
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Lee, Lindsay, Yu, Hongyu, Jia, Bojing Blair, Jussila, Adam, Zhu, Chenxu, Chen, Jiawen, Xie, Liangqi, Hafner, Antonina, Mishra, Shreya, Wang, Duan Dennis, Strambio-De-Castillia, Caterina, Boettiger, Alistair, Ren, Bing, Li, Yun, Hu, Ming
Published in Nature communications (12.08.2023)
Published in Nature communications (12.08.2023)
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Journal Article
The nuclear basket proteins Mlp1p and Mlp2p are part of a dynamic interactome including Esc1p and the proteasome
Niepel, Mario, Molloy, Kelly R, Williams, Rosemary, Farr, Julia C, Meinema, Anne C, Vecchietti, Nicholas, Cristea, Ileana M, Chait, Brian T, Rout, Michael P, Strambio-De-Castillia, Caterina
Published in Molecular biology of the cell (15.12.2013)
Published in Molecular biology of the cell (15.12.2013)
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Journal Article
An Invariant Surface Patch on the TRIM5α PRYSPRY Domain Is Required for Retroviral Restriction but Dispensable for Capsid Binding
SEBASTIAN, Sarah, GRÜTTER, Christian, STRAMBIO DE CASTILLIA, Caterina, PERTEL, Thomas, OLIVARI, Silvia, GRÜTTER, Markus G, LUBAN, Jeremy
Published in Journal of Virology (01.04.2009)
Published in Journal of Virology (01.04.2009)
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Journal Article
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
Rigano, Alessandro, Ehmsen, Shannon, Öztürk, Serkan Utku, Ryan, Joel, Balashov, Alexander, Hammer, Mathias, Kirli, Koray, Boehm, Ulrike, Brown, Claire M., Bellve, Karl, Chambers, James J., Cosolo, Andrea, Coleman, Robert A., Faklaris, Orestis, Fogarty, Kevin E., Guilbert, Thomas, Hamacher, Anna B., Itano, Michelle S., Keeley, Daniel P., Kunis, Susanne, Lacoste, Judith, Laude, Alex, Ma, Willa Y., Marcello, Marco, Montero-Llopis, Paula, Nelson, Glyn, Nitschke, Roland, Pimentel, Jaime A., Weidtkamp-Peters, Stefanie, Park, Peter J., Alver, Burak H., Grunwald, David, Strambio-De-Castillia, Caterina
Published in Nature methods (01.12.2021)
Published in Nature methods (01.12.2021)
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Journal Article
Author Correction: Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Hammer, Mathias, Huisman, Maximiliaan, Rigano, Alessandro, Boehm, Ulrike, Chambers, James J., Gaudreault, Nathalie, North, Alison J., Pimentel, Jaime A., Sudar, Damir, Bajcsy, Peter, Brown, Claire M., Corbett, Alexander D., Faklaris, Orestis, Lacoste, Judith, Laude, Alex, Nelson, Glyn, Nitschke, Roland, Farzam, Farzin, Smith, Carlas S., Grunwald, David, Strambio-De-Castillia, Caterina
Published in Nature methods (01.02.2022)
Published in Nature methods (01.02.2022)
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Journal Article
Author Correction: QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy
Boehm, Ulrike, Nelson, Glyn, Brown, Claire M., Bagley, Steve, Bajcsy, Peter, Bischof, Johanna, Dauphin, Aurelien, Dobbie, Ian M., Eriksson, John E., Faklaris, Orestis, Fernandez-Rodriguez, Julia, Ferrand, Alexia, Gelman, Laurent, Gheisari, Ali, Hartmann, Hella, Kukat, Christian, Laude, Alex, Mitkovski, Miso, Munck, Sebastian, North, Alison J., Rasse, Tobias M., Resch-Genger, Ute, Schuetz, Lucas C., Seitz, Arne, Strambio-De-Castillia, Caterina, Swedlow, Jason R., Nitschke, Roland
Published in Nature methods (01.02.2022)
Published in Nature methods (01.02.2022)
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Journal Article
Potent inhibition of HIV-1 by TRIM5-cyclophilin fusion proteins engineered from human components
Neagu, Martha R, Ziegler, Patrick, Pertel, Thomas, Strambio-De-Castillia, Caterina, Grütter, Christian, Martinetti, Gladys, Mazzucchelli, Luca, Grütter, Markus, Manz, Markus G, Luban, Jeremy
Published in The Journal of clinical investigation (01.10.2009)
Published in The Journal of clinical investigation (01.10.2009)
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Journal Article
Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
Rigano, Alessandro, Ehmsen, Shannon, Öztürk, Serkan Utku, Ryan, Joel, Balashov, Alexander, Hammer, Mathias, Kirli, Koray, Boehm, Ulrike, Brown, Claire M., Bellve, Karl, Chambers, James J., Cosolo, Andrea, Coleman, Robert A., Faklaris, Orestis, Fogarty, Kevin E., Guilbert, Thomas, Hamacher, Anna B., Itano, Michelle S., Keeley, Daniel P., Kunis, Susanne, Lacoste, Judith, Laude, Alex, Ma, Willa Y., Marcello, Marco, Montero-Llopis, Paula, Nelson, Glyn, Nitschke, Roland, Pimentel, Jaime A., Weidtkamp-Peters, Stefanie, Park, Peter J., Alver, Burak H., Grunwald, David, Strambio-De-Castillia, Caterina
Published in Nature methods (01.02.2022)
Published in Nature methods (01.02.2022)
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Journal Article
Optimization by infusion of multiple reaction monitoring transitions for sensitive quantification of peptides by liquid chromatography/mass spectrometry
Alghanem, Bandar, Nikitin, Frédéric, Stricker, Thomas, Duchoslav, Eva, Luban, Jeremy, Strambio‐De‐Castillia, Caterina, Muller, Markus, Lisacek, Frédérique, Varesio, Emmanuel, Hopfgartner, Gérard
Published in Rapid communications in mass spectrometry (15.05.2017)
Published in Rapid communications in mass spectrometry (15.05.2017)
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Journal Article
nuclear pore complex-associated protein, Mlp2p, binds to the yeast spindle pole body and promotes its efficient assembly
Niepel, Mario, Strambio-de-Castillia, Caterina, Fasolo, Joseph, Chait, Brian T, Rout, Michael P
Published in The Journal of cell biology (18.07.2005)
Published in The Journal of cell biology (18.07.2005)
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Journal Article
Proteins Connecting the Nuclear Pore Complex with the Nuclear Interior
Caterina Strambio-de-Castillia, Blobel, Günter, Rout, Michael P.
Published in The Journal of cell biology (08.03.1999)
Published in The Journal of cell biology (08.03.1999)
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