Human centromere repositioning activates transcription and opens chromatin fibre structure
Naughton, Catherine, Huidobro, Covadonga, Catacchio, Claudia R, Buckle, Adam, Grimes, Graeme R, Nozawa, Ryu-Suke, Purgato, Stefania, Rocchi, Mariano, Gilbert, Nick
Published in Nature communications (24.09.2022)
Published in Nature communications (24.09.2022)
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Journal Article
Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus
Paparella, Annalisa, L’Abbate, Alberto, Palmisano, Donato, Chirico, Gerardina, Porubsky, David, Catacchio, Claudia R, Ventura, Mario, Eichler, Evan E, Maggiolini, Flavia A. M, Antonacci, Francesca
Published in International journal of molecular sciences (01.11.2023)
Published in International journal of molecular sciences (01.11.2023)
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Journal Article
Evolution and diversity of copy number variation in the great ape lineage
Sudmant, Peter H, Huddleston, John, Catacchio, Claudia R, Malig, Maika, Hillier, Ladeana W, Baker, Carl, Mohajeri, Kiana, Kondova, Ivanela, Bontrop, Ronald E, Persengiev, Stephan, Antonacci, Francesca, Ventura, Mario, Prado-Martinez, Javier, Marques-Bonet, Tomas, Eichler, Evan E
Published in Genome research (01.09.2013)
Published in Genome research (01.09.2013)
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Journal Article
Epigenetic origin of evolutionary novel centromeres
Tolomeo, Doron, Capozzi, Oronzo, Stanyon, Roscoe R, Archidiacono, Nicoletta, D'Addabbo, Pietro, Catacchio, Claudia R, Purgato, Stefania, Perini, Giovanni, Schempp, Werner, Huddleston, John, Malig, Maika, Eichler, Evan E, Rocchi, Mariano
Published in Scientific reports (03.02.2017)
Published in Scientific reports (03.02.2017)
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Journal Article
A systematic mapping study on machine learning techniques for the prediction of CRISPR/Cas9 sgRNA target cleavage
Dimauro, Giovanni, Barletta, Vita S., Catacchio, Claudia R., Colizzi, Lucio, Maglietta, Rosalia, Ventura, Mario
Published in Computational and structural biotechnology journal (01.01.2022)
Published in Computational and structural biotechnology journal (01.01.2022)
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Journal Article
Rates and patterns of great ape retrotransposition
Hormozdiari, Fereydoun, Konkel, Miriam K., Prado-Martinez, Javier, Chiatante, Giorgia, Herraez, Irene Hernando, Walker, Jerilyn A., Nelson, Benjamin, Alkan, Can, Sudmant, Peter H., Huddleston, John, Catacchio, Claudia R., Ko, Arthur, Malig, Maika, Baker, Carl, Marques-Bonet, Tomas, Ventura, Mario, Batzer, Mark A., Eichler, Evan E.
Published in Proceedings of the National Academy of Sciences - PNAS (13.08.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (13.08.2013)
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Journal Article
The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
Ventura, Mario, Catacchio, Claudia R, Sajjadian, Saba, Vives, Laura, Sudmant, Peter H, Marques-Bonet, Tomas, Graves, Tina A, Wilson, Richard K, Eichler, Evan E
Published in Genome research (01.06.2012)
Published in Genome research (01.06.2012)
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Journal Article
The variation and evolution of complete human centromeres
Logsdon, Glennis A, Rozanski, Allison N, Ryabov, Fedor, Potapova, Tamara, Shepelev, Valery A, Catacchio, Claudia R, Porubsky, David, Mao, Yafei, Yoo, DongAhn, Rautiainen, Mikko, Koren, Sergey, Nurk, Sergey, Lucas, Julian K, Hoekzema, Kendra, Munson, Katherine M, Gerton, Jennifer L, Phillippy, Adam M, Ventura, Mario, Alexandrov, Ivan A, Eichler, Evan E
Published in Nature (London) (02.05.2024)
Published in Nature (London) (02.05.2024)
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Journal Article
A high-quality bonobo genome refines the analysis of hominid evolution
Mao, Yafei, Catacchio, Claudia R, Hillier, LaDeana W, Porubsky, David, Li, Ruiyang, Sulovari, Arvis, Fernandes, Jason D, Montinaro, Francesco, Gordon, David S, Storer, Jessica M, Haukness, Marina, Fiddes, Ian T, Murali, Shwetha Canchi, Dishuck, Philip C, Hsieh, PingHsun, Harvey, William T, Audano, Peter A, Mercuri, Ludovica, Piccolo, Ilaria, Antonacci, Francesca, Munson, Katherine M, Lewis, Alexandra P, Baker, Carl, Underwood, Jason G, Hoekzema, Kendra, Huang, Tzu-Hsueh, Sorensen, Melanie, Walker, Jerilyn A, Hoffman, Jinna, Thibaud-Nissen, Françoise, Salama, Sofie R, Pang, Andy W C, Lee, Joyce, Hastie, Alex R, Paten, Benedict, Batzer, Mark A, Diekhans, Mark, Ventura, Mario, Eichler, Evan E
Published in Nature (London) (03.06.2021)
Published in Nature (London) (03.06.2021)
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Journal Article
Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
Ventura, Mario, Catacchio, Claudia R, Sajjadian, Saba, Vives, Laura, Sudmant, Peter H, Marques-Bonet, Tomas, Graves, Tina A, Wilson, Richard K, Eichler, Evan E
Published in Genome research (01.09.2017)
Published in Genome research (01.09.2017)
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Journal Article
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee
Ventura, Mario, Catacchio, Claudia R, Alkan, Can, Marques-Bonet, Tomas, Sajjadian, Saba, Graves, Tina A, Hormozdiari, Fereydoun, Navarro, Arcadi, Malig, Maika, Baker, Carl, Lee, Choli, Turner, Emily H, Chen, Lin, Kidd, Jeffrey M, Archidiacono, Nicoletta, Shendure, Jay, Wilson, Richard K, Eichler, Evan E
Published in Genome research (01.10.2011)
Published in Genome research (01.10.2011)
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Journal Article
Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo (Bubalus bubalis)
Liu, Shuli, Kang, Xiaolong, Catacchio, Claudia R., Liu, Mei, Fang, Lingzhao, Schroeder, Steven G., Li, Wenli, Rosen, Benjamin D., Iamartino, Daniela, Iannuzzi, Leopoldo, Sonstegard, Tad S., Van Tassell, Curtis P., Ventura, Mario, Low, Wai Yee, Williams, John L., Bickhart, Derek M., Liu, George E.
Published in Functional & integrative genomics (01.05.2019)
Published in Functional & integrative genomics (01.05.2019)
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Journal Article
Colonization of Wild Saccharomyces cerevisiae Strains in a New Winery
Abdo, Hany, Catacchio, Claudia R., Ventura, Mario, D’Addabbo, Pietro, Calabrese, Francesco Maria, Laurent, Julie, David-Vaizant, Vanessa, Alexandre, Hervé, Guilloux-Bénatier, Michèle, Rousseaux, Sandrine
Published in Beverages (Basel) (01.03.2020)
Published in Beverages (Basel) (01.03.2020)
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Journal Article
The comparative genomics and complex population history of Papio baboons
Rogers, Jeffrey, Raveendran, Muthuswamy, Harris, R Alan, Mailund, Thomas, Leppälä, Kalle, Athanasiadis, Georgios, Schierup, Mikkel Heide, Cheng, Jade, Munch, Kasper, Walker, Jerilyn A, Konkel, Miriam K, Jordan, Vallmer, Steely, Cody J, Beckstrom, Thomas O, Bergey, Christina, Burrell, Andrew, Schrempf, Dominik, Noll, Angela, Kothe, Maximillian, Kopp, Gisela H, Liu, Yue, Murali, Shwetha, Billis, Konstantinos, Martin, Fergal J, Muffato, Matthieu, Cox, Laura, Else, James, Disotell, Todd, Muzny, Donna M, Phillips-Conroy, Jane, Aken, Bronwen, Eichler, Evan E, Marques-Bonet, Tomas, Kosiol, Carolin, Batzer, Mark A, Hahn, Matthew W, Tung, Jenny, Zinner, Dietmar, Roos, Christian, Jolly, Clifford J, Gibbs, Richard A, Worley, Kim C
Published in Science advances (01.01.2019)
Published in Science advances (01.01.2019)
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Journal Article
Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons
Steely, Cody J, Walker, Jerilyn A, Jordan, Vallmer E, Beckstrom, Thomas O, McDaniel, Cullen L, St Romain, Corey P, Bennett, Emily C, Robichaux, Arianna, Clement, Brooke N, Raveendran, Muthuswamy, Worley, Kim C, Phillips-Conroy, Jane, Jolly, Clifford J, Rogers, Jeff, Konkel, Miriam K, Batzer, Mark A
Published in Genome biology and evolution (01.09.2017)
Published in Genome biology and evolution (01.09.2017)
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Journal Article
Papio Baboon Species Indicative Alu Elements
Walker, Jerilyn A, Jordan, Vallmer E, Steely, Cody J, Beckstrom, Thomas O, McDaniel, Cullen L, St Romain, Corey P, Bennett, Emily C, Robichaux, Arianna, Clement, Brooke N, Konkel, Miriam K, Batzer, Mark A
Published in Genome biology and evolution (01.06.2017)
Published in Genome biology and evolution (01.06.2017)
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Journal Article
Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis
Steely, Cody J, Baker, Jasmine N, Walker, Jerilyn A, Loupe, 3rd, Charles D, Batzer, Mark A
Published in Mobile DNA (19.03.2018)
Published in Mobile DNA (19.03.2018)
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Journal Article