Molluscan genomics: the road so far and the way forward
Gomes-dos-Santos, André, Lopes-Lima, Manuel, Castro, L. Filipe C., Froufe, Elsa
Published in Hydrobiologia (01.04.2020)
Published in Hydrobiologia (01.04.2020)
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The Mammalian "Obesogen" Tributyltin Targets Hepatic Triglyceride Accumulation and the Transcriptional Regulation of Lipid Metabolism in the Liver and Brain of Zebrafish
Lyssimachou, Angeliki, Santos, Joana G, André, Ana, Soares, Joana, Lima, Daniela, Guimarães, Laura, Almeida, C Marisa R, Teixeira, Catarina, Castro, L Filipe C, Santos, Miguel M
Published in PloS one (03.12.2015)
Published in PloS one (03.12.2015)
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Evolutionary functional elaboration of the Elovl2/5 gene family in chordates
Monroig, Óscar, Lopes-Marques, Mónica, Navarro, Juan C, Hontoria, Francisco, Ruivo, Raquel, Santos, Miguel M, Venkatesh, Byrappa, Tocher, Douglas R, Castro, L Filipe C
Published in Scientific reports (09.02.2016)
Published in Scientific reports (09.02.2016)
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Retention of fatty acyl desaturase 1 (fads1) in Elopomorpha and Cyclostomata provides novel insights into the evolution of long-chain polyunsaturated fatty acid biosynthesis in vertebrates
Lopes-Marques, Mónica, Kabeya, Naoki, Qian, Yu, Ruivo, Raquel, Santos, Miguel M, Venkatesh, Byrappa, Tocher, Douglas R, Castro, L Filipe C, Monroig, Óscar
Published in BMC evolutionary biology (19.10.2018)
Published in BMC evolutionary biology (19.10.2018)
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A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)
Gomes‐dos‐Santos, André, Froufe, Elsa, Pfeiffer, John M., Johnson, Nathan A., Smith, Chase H., Machado, André M., C. Castro, L. Filipe, Do, Van Tu, Hattori, Akimasa, Garrison, Nicole, Whelan, Nathan V., Bolotov, Ivan N., Vikhrev, Ilya V., Kondakov, Alexander V., Ghamizi, Mohamed, Prié, Vincent, Bogan, Arthur E., Lopes Lima, Manuel
Published in Molecular ecology resources (01.08.2023)
Published in Molecular ecology resources (01.08.2023)
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Alterations of pleiotropic neuropeptide-receptor gene couples in Cetacea
Valente, Raul, Cordeiro, Miguel, Pinto, Bernardo, Machado, André, Alves, Filipe, Sousa-Pinto, Isabel, Ruivo, Raquel, Castro, L. Filipe C
Published in BMC biology (02.09.2024)
Published in BMC biology (02.09.2024)
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Journal Article
Of Retinoids and Organotins: The Evolution of the Retinoid X Receptor in Metazoa
Fonseca, Elza, Ruivo, Raquel, Borges, Débora, Franco, João N, Santos, Miguel M, C Castro, L Filipe
Published in Biomolecules (Basel, Switzerland) (11.04.2020)
Published in Biomolecules (Basel, Switzerland) (11.04.2020)
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Journal Article
Complete inactivation of sebum-producing genes parallels the loss of sebaceous glands in Cetacea
Lopes-Marques, Mónica, Machado, André M, Alves, Luís Q, Fonseca, Miguel M, Barbosa, Susana, Sinding, Mikkel-Holger S, Rasmussen, Marianne Helene, Iversen, Maria Refsgaard, Frost Bertelsen, Mads, Campos, Paula F, da Fonseca, Rute, Ruivo, Raquel, Castro, L Filipe C
Published in Molecular biology and evolution (01.06.2019)
Published in Molecular biology and evolution (01.06.2019)
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Journal Article
PseudoChecker: an integrated online platform for gene inactivation inference
Alves, Luís Q, Ruivo, Raquel, Fonseca, Miguel M, Lopes-Marques, Mónica, Ribeiro, Pedro, Castro, L Filipe C
Published in Nucleic acids research (02.07.2020)
Published in Nucleic acids research (02.07.2020)
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Journal Article
The chromosome-level genome and key genes associated with mud-dwelling behavior and adaptations of hypoxia and noxious environments in loach (Misgurnus anguillicaudatus)
Sun, Bing, Huang, Yuwei, Castro, L Filipe C, Yang, Su, Huang, Songqian, Jin, Wu, Zhou, He, Ijiri, Shigeho, Luo, Yi, Gao, Jian, Cao, Xiaojuan
Published in BMC biology (01.02.2023)
Published in BMC biology (01.02.2023)
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Journal Article
" Out of the Can ": A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus
Machado, André M, Tørresen, Ole K, Kabeya, Naoki, Couto, Alvarina, Petersen, Bent, Felício, Mónica, Campos, Paula F, Fonseca, Elza, Bandarra, Narcisa, Lopes-Marques, Mónica, Ferraz, Renato, Ruivo, Raquel, Fonseca, Miguel M, Jentoft, Sissel, Monroig, Óscar, da Fonseca, Rute R, C Castro, L Filipe
Published in Genes (09.10.2018)
Published in Genes (09.10.2018)
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Journal Article
The evolution of S100A7: an unusual gene expansion in Myotis bats
Águeda-Pinto, Ana, Castro, L Filipe C, Esteves, Pedro J
Published in BMC ecology and evolution (14.05.2019)
Published in BMC ecology and evolution (14.05.2019)
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Journal Article
Tributyltin Affects Retinoid X Receptor-Mediated Lipid Metabolism in the Marine Rotifer Brachionus koreanus
Lee, Min-Chul, Fonseca, Elza, Park, Jun Chul, Yoon, Deok-Seo, Choi, Hyuntae, Kim, Moonkoo, Han, Jeonghoon, Cho, Hyeon-Seo, Shin, Kyung-Hoon, Santos, Miguel L, Jung, Jee-Hyun, Castro, L. Filipe C, Lee, Jae-Seong
Published in Environmental science & technology (02.07.2019)
Published in Environmental science & technology (02.07.2019)
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Journal Article
The Gastric Phenotype in the Cypriniform Loaches: A Case of Reinvention?
Gonçalves, Odete, Castro, L Filipe C, Smolka, Adam J, Fontainhas, António, Wilson, Jonathan M
Published in PloS one (26.10.2016)
Published in PloS one (26.10.2016)
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Journal Article
Reprogramming capacity of Nanog is functionally conserved in vertebrates and resides in a unique homeodomain
Theunissen, Thorold W, Costa, Yael, Radzisheuskaya, Aliaksandra, van Oosten, Anouk L, Lavial, Fabrice, Pain, Bertrand, Castro, L Filipe C, Silva, José C R
Published in Development (Cambridge) (15.11.2011)
Published in Development (Cambridge) (15.11.2011)
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Journal Article
Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia
da Fonseca, Rute R, Campos, Paula F, Rey-Iglesia, Alba, Barroso, Gustavo V, Bergeron, Lucie A, Nande, Manuel, Tuya, Fernando, Abidli, Sami, Pérez, Montse, Riveiro, Isabel, Carrera, Pablo, Jurado-Ruzafa, Alba, G Santamaría, M Teresa, Faria, Rui, Machado, André M, Fonseca, Miguel M, Froufe, Elsa, C Castro, L Filipe
Published in Genes (01.01.2024)
Published in Genes (01.01.2024)
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Journal Article
The gill transcriptome of threatened European freshwater mussels
Gomes-dos-Santos, André, Machado, André M., Castro, L. Filipe C., Prié, Vincent, Teixeira, Amílcar, Lopes-Lima, Manuel, Froufe, Elsa
Published in Scientific data (13.08.2022)
Published in Scientific data (13.08.2022)
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