Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic
Boni, Maciej F., Lemey, Philippe, Jiang, Xiaowei, Lam, Tommy Tsan-Yuk, Perry, Blair W., Castoe, Todd A., Rambaut, Andrew, Robertson, David L.
Published in Nature microbiology (01.11.2020)
Published in Nature microbiology (01.11.2020)
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Journal Article
Repetitive elements may comprise over two-thirds of the human genome
de Koning, A P Jason, Gu, Wanjun, Castoe, Todd A, Batzer, Mark A, Pollock, David D
Published in PLoS genetics (01.12.2011)
Published in PLoS genetics (01.12.2011)
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Journal Article
The Discovery of XY Sex Chromosomes in a Boa and Python
Gamble, Tony, Castoe, Todd A., Nielsen, Stuart V., Banks, Jaison L., Card, Daren C., Schield, Drew R., Schuett, Gordon W., Booth, Warren
Published in Current biology (24.07.2017)
Published in Current biology (24.07.2017)
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Journal Article
The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes
Schield, Drew R, Card, Daren C, Hales, Nicole R, Perry, Blair W, Pasquesi, Giulia M, Blackmon, Heath, Adams, Richard H, Corbin, Andrew B, Smith, Cara F, Ramesh, Balan, Demuth, Jeffery P, Betrán, Esther, Tollis, Marc, Meik, Jesse M, Mackessy, Stephen P, Castoe, Todd A
Published in Genome research (01.04.2019)
Published in Genome research (01.04.2019)
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Journal Article
Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals
Pasquesi, Giulia I. M., Adams, Richard H., Card, Daren C., Schield, Drew R., Corbin, Andrew B., Perry, Blair W., Reyes-Velasco, Jacobo, Ruggiero, Robert P., Vandewege, Michael W., Shortt, Jonathan A., Castoe, Todd A.
Published in Nature communications (17.07.2018)
Published in Nature communications (17.07.2018)
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Journal Article
Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake
Castoe, Todd A, Poole, Alexander W, de Koning, A P Jason, Jones, Kenneth L, Tomback, Diana F, Oyler-McCance, Sara J, Fike, Jennifer A, Lance, Stacey L, Streicher, Jeffrey W, Smith, Eric N, Pollock, David D
Published in PloS one (14.02.2012)
Published in PloS one (14.02.2012)
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Journal Article
Comparative phylogeographic analyses illustrate the complex evolutionary history of threatened cloud forests of northern Mesoamerica
Ornelas, Juan Francisco, Sosa, Victoria, Soltis, Douglas E, Daza, Juan M, González, Clementina, Soltis, Pamela S, Gutiérrez-Rodríguez, Carla, de los Monteros, Alejandro Espinosa, Castoe, Todd A, Bell, Charles, Ruiz-Sanchez, Eduardo
Published in PloS one (07.02.2013)
Published in PloS one (07.02.2013)
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Journal Article
Hormonally Mediated Increases in Sex-Biased Gene Expression Accompany the Breakdown of Between-Sex Genetic Correlations in a Sexually Dimorphic Lizard
Cox, Robert M, Cox, Christian L, McGlothlin, Joel W, Card, Daren C, Andrew, Audra L, Castoe, Todd A
Published in The American naturalist (01.03.2017)
Published in The American naturalist (01.03.2017)
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Journal Article
Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis
Card, Daren C., Vonk, Freek J., Smalbrugge, Sterrin, Casewell, Nicholas R., Wüster, Wolfgang, Castoe, Todd A., Schuett, Gordon W., Booth, Warren
Published in Scientific reports (31.03.2021)
Published in Scientific reports (31.03.2021)
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Journal Article
Snakes on a plain: biotic and abiotic factors determine venom compositional variation in a wide-ranging generalist rattlesnake
Smith, Cara F, Nikolakis, Zachary L, Ivey, Kathleen, Perry, Blair W, Schield, Drew R, Balchan, Neil R, Parker, Joshua, Hansen, Kirk C, Saviola, Anthony J, Castoe, Todd A, Mackessy, Stephen P
Published in BMC biology (06.06.2023)
Published in BMC biology (06.06.2023)
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Journal Article
Evidence for an ancient adaptive episode of convergent molecular evolution
Castoe, Todd A, de Koning, A.P. Jason, Kim, Hyun-Min, Gu, Wanjun, Noonan, Brice P, Naylor, Gavin, Jiang, Zhi J, Parkinson, Christopher L, Pollock, David D
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2009)
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Journal Article
Phylogenetic relationships among Staphylococcus species and refinement of cluster groups based on multilocus data
Lamers, Ryan P, Muthukrishnan, Gowrishankar, Castoe, Todd A, Tafur, Sergio, Cole, Alexander M, Parkinson, Christopher L
Published in BMC evolutionary biology (06.09.2012)
Published in BMC evolutionary biology (06.09.2012)
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Journal Article
Genetic consequences of postglacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus
Jezkova, Tereza, Riddle, Brett R., Card, Daren C., Schield, Drew R., Eckstut, Mallory E., Castoe, Todd A.
Published in Molecular ecology (01.01.2015)
Published in Molecular ecology (01.01.2015)
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Journal Article
Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
CASTOE, TODD A, POOLE, ALEXANDER W, GU, WANJUN, JASONdeKONING, A.P, DAZA, JUAN M, SMITH, ERIC N, POLLOCK, DAVID D
Published in Molecular ecology resources (01.03.2010)
Published in Molecular ecology resources (01.03.2010)
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Journal Article
EpiRADseq: scalable analysis of genomewide patterns of methylation using next‐generation sequencing
Schield, Drew R., Walsh, Matthew R., Card, Daren C., Andrew, Audra L., Adams, Richard H., Castoe, Todd A., Bunce, Michael
Published in Methods in ecology and evolution (01.01.2016)
Published in Methods in ecology and evolution (01.01.2016)
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Journal Article
Adaptive evolution and functional redesign of core metabolic proteins in snakes
Castoe, Todd A, Jiang, Zhi J, Gu, Wanjun, Wang, Zhengyuan O, Pollock, David D
Published in PloS one (21.05.2008)
Published in PloS one (21.05.2008)
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Journal Article
Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance
McGlothlin, Joel W., Kobiela, Megan E., Feldman, Chris R., Castoe, Todd A., Geffeney, Shana L., Hanifin, Charles T., Toledo, Gabriela, Vonk, Freek J., Richardson, Michael K., Brodie, Edmund D., Pfrender, Michael E., Brodie, Edmund D.
Published in Current biology (20.06.2016)
Published in Current biology (20.06.2016)
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Journal Article
Hunting behavior and feeding ecology of Mojave rattlesnakes (Crotalus scutulatus), prairie rattlesnakes (Crotalus viridis), and their hybrids in southwestern New Mexico
Maag, Dylan W., Francioli, Yannick Z., Shaw, Noelle, Soni, Ashana Y., Castoe, Todd A., Schuett, Gordon W., Clark, Rulon W.
Published in Ecology and evolution (01.11.2023)
Published in Ecology and evolution (01.11.2023)
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Journal Article
Population genomic analyses of schistosome parasites highlight critical challenges facing endgame elimination efforts
Shortt, Jonathan A., Timm, Laura E., Hales, Nicole R., Nikolakis, Zachary L., Schield, Drew R., Perry, Blair W., Liu, Yang, Zhong, Bo, Castoe, Todd A., Carlton, Elizabeth J., Pollock, David D.
Published in Scientific reports (25.03.2021)
Published in Scientific reports (25.03.2021)
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Journal Article
Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python
Andrew, Audra L, Perry, Blair W, Card, Daren C, Schield, Drew R, Ruggiero, Robert P, McGaugh, Suzanne E, Choudhary, Amit, Secor, Stephen M, Castoe, Todd A
Published in BMC genomics (02.05.2017)
Published in BMC genomics (02.05.2017)
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