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RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
Bonetti, Alessandro, Agostini, Federico, Suzuki, Ana Maria, Hashimoto, Kosuke, Pascarella, Giovanni, Gimenez, Juliette, Roos, Leonie, Nash, Alex J., Ghilotti, Marco, Cameron, Christopher J. F., Valentine, Matthew, Medvedeva, Yulia A., Noguchi, Shuhei, Agirre, Eneritz, Kashi, Kaori, Samudyata, Luginbühl, Joachim, Cazzoli, Riccardo, Agrawal, Saumya, Luscombe, Nicholas M., Blanchette, Mathieu, Kasukawa, Takeya, Hoon, Michiel de, Arner, Erik, Lenhard, Boris, Plessy, Charles, Castelo-Branco, Gonçalo, Orlando, Valerio, Carninci, Piero
Published in Nature communications (24.02.2020)
Published in Nature communications (24.02.2020)
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Neural Stem Cell Differentiation Is Dictated by Distinct Actions of Nuclear Receptor Corepressors and Histone Deacetylases
Castelo-Branco, Gonçalo, Lilja, Tobias, Wallenborg, Karolina, Falcão, Ana M., Marques, Sueli C., Gracias, Aileen, Solum, Derek, Paap, Ricardo, Walfridsson, Julian, Teixeira, Ana I., Rosenfeld, Michael G., Jepsen, Kristen, Hermanson, Ola
Published in Stem cell reports (09.09.2014)
Published in Stem cell reports (09.09.2014)
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Functionally distinct subgroups of oligodendrocyte precursor cells integrate neural activity and execute myelin formation
Marisca, Roberta, Hoche, Tobias, Agirre, Eneritz, Hoodless, Laura Jane, Barkey, Wenke, Auer, Franziska, Castelo-Branco, Gonçalo, Czopka, Tim
Published in Nature neuroscience (01.03.2020)
Published in Nature neuroscience (01.03.2020)
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Spatial-CUT&Tag: Spatially resolved chromatin modification profiling at the cellular level
Deng, Yanxiang, Bartosovic, Marek, Kukanja, Petra, Zhang, Di, Liu, Yang, Su, Graham, Enninful, Archibald, Bai, Zhiliang, Castelo-Branco, Gonçalo, Fan, Rong
Published in Science (American Association for the Advancement of Science) (11.02.2022)
Published in Science (American Association for the Advancement of Science) (11.02.2022)
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An Atlas of Vagal Sensory Neurons and Their Molecular Specialization
Kupari, Jussi, Häring, Martin, Agirre, Eneritz, Castelo-Branco, Gonçalo, Ernfors, Patrik
Published in Cell reports (Cambridge) (21.05.2019)
Published in Cell reports (Cambridge) (21.05.2019)
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Crossing boundaries: Interplay between the immune system and oligodendrocyte lineage cells
Kirby, Leslie, Castelo-Branco, Gonçalo
Published in Seminars in cell & developmental biology (01.08.2021)
Published in Seminars in cell & developmental biology (01.08.2021)
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Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis
Falcão, Ana Mendanha, van Bruggen, David, Marques, Sueli, Meijer, Mandy, Jäkel, Sarah, Agirre, Eneritz, Samudyata, Floriddia, Elisa M, Vanichkina, Darya P, Ffrench-Constant, Charles, Williams, Anna, Guerreiro-Cacais, André Ortlieb, Castelo-Branco, Gonçalo
Published in Nature medicine (01.12.2018)
Published in Nature medicine (01.12.2018)
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Spatial epigenome–transcriptome co-profiling of mammalian tissues
Zhang, Di, Deng, Yanxiang, Kukanja, Petra, Agirre, Eneritz, Bartosovic, Marek, Dong, Mingze, Ma, Cong, Ma, Sai, Su, Graham, Bao, Shuozhen, Liu, Yang, Xiao, Yang, Rosoklija, Gorazd B., Dwork, Andrew J., Mann, J. John, Leong, Kam W., Boldrini, Maura, Wang, Liya, Haeussler, Maximilian, Raphael, Benjamin J., Kluger, Yuval, Castelo-Branco, Gonçalo, Fan, Rong
Published in Nature (London) (06.04.2023)
Published in Nature (London) (06.04.2023)
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Spatial profiling of chromatin accessibility in mouse and human tissues
Deng, Yanxiang, Bartosovic, Marek, Ma, Sai, Zhang, Di, Kukanja, Petra, Xiao, Yang, Su, Graham, Liu, Yang, Qin, Xiaoyu, Rosoklija, Gorazd B., Dwork, Andrew J., Mann, J. John, Xu, Mina L., Halene, Stephanie, Craft, Joseph E., Leong, Kam W., Boldrini, Maura, Castelo-Branco, Gonçalo, Fan, Rong
Published in Nature (London) (08.09.2022)
Published in Nature (London) (08.09.2022)
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Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
Zeisel, Amit, Muñoz-Manchado, Ana B., Codeluppi, Simone, Lönnerberg, Peter, La Manno, Gioele, Juréus, Anna, Marques, Sueli, Munguba, Hermany, He, Liqun, Betsholtz, Christer, Rolny, Charlotte, Castelo-Branco, Gonçalo, Hjerling-Leffler, Jens, Linnarsson, Sten
Published in Science (American Association for the Advancement of Science) (06.03.2015)
Published in Science (American Association for the Advancement of Science) (06.03.2015)
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Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system
Marques, Sueli, Zeisel, Amit, Codeluppi, Simone, van Bruggen, David, Falcão, Ana Mendanha, Xiao, Lin, Li, Huiliang, Häring, Martin, Hochgerner, Hannah, Romanov, Roman A., Gyllborg, Daniel, Muñoz-Manchado, Ana B., La Manno, Gioele, Lönnerberg, Peter, Floriddia, Elisa M., Rezayee, Fatemah, Ernfors, Patrik, Arenas, Ernest, Hjerling-Leffler, Jens, Harkany, Tibor, Richardson, William D., Linnarsson, Sten, Castelo-Branco, Gonçalo
Published in Science (American Association for the Advancement of Science) (10.06.2016)
Published in Science (American Association for the Advancement of Science) (10.06.2016)
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Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury
Floriddia, Elisa M., Lourenço, Tânia, Zhang, Shupei, van Bruggen, David, Hilscher, Markus M., Kukanja, Petra, Gonçalves dos Santos, João P., Altınkök, Müge, Yokota, Chika, Llorens-Bobadilla, Enric, Mulinyawe, Sara B., Grãos, Mário, Sun, Lu O., Frisén, Jonas, Nilsson, Mats, Castelo-Branco, Gonçalo
Published in Nature communications (17.11.2020)
Published in Nature communications (17.11.2020)
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Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development
Marques, Sueli, van Bruggen, David, Vanichkina, Darya Pavlovna, Floriddia, Elisa Mariagrazia, Munguba, Hermany, Väremo, Leif, Giacomello, Stefania, Falcão, Ana Mendanha, Meijer, Mandy, Björklund, Åsa Kristina, Hjerling-Leffler, Jens, Taft, Ryan James, Castelo-Branco, Gonçalo
Published in Developmental cell (20.08.2018)
Published in Developmental cell (20.08.2018)
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Cell-type specialization is encoded by specific chromatin topologies
Winick-Ng, Warren, Kukalev, Alexander, Harabula, Izabela, Zea-Redondo, Luna, Szabó, Dominik, Meijer, Mandy, Serebreni, Leonid, Zhang, Yingnan, Bianco, Simona, Chiariello, Andrea M., Irastorza-Azcarate, Ibai, Thieme, Christoph J., Sparks, Thomas M., Carvalho, Sílvia, Fiorillo, Luca, Musella, Francesco, Irani, Ehsan, Torlai Triglia, Elena, Kolodziejczyk, Aleksandra A., Abentung, Andreas, Apostolova, Galina, Paul, Eleanor J., Franke, Vedran, Kempfer, Rieke, Akalin, Altuna, Teichmann, Sarah A., Dechant, Georg, Ungless, Mark A., Nicodemi, Mario, Welch, Lonnie, Castelo-Branco, Gonçalo, Pombo, Ana
Published in Nature (London) (25.11.2021)
Published in Nature (London) (25.11.2021)
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Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues
Bartosovic, Marek, Kabbe, Mukund, Castelo-Branco, Gonçalo
Published in Nature biotechnology (01.07.2021)
Published in Nature biotechnology (01.07.2021)
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Gsta4 controls apoptosis of differentiating adult oligodendrocytes during homeostasis and remyelination via the mitochondria-associated Fas-Casp8-Bid-axis
Carlström, Karl E., Zhu, Keying, Ewing, Ewoud, Krabbendam, Inge E., Harris, Robert A., Falcão, Ana Mendanha, Jagodic, Maja, Castelo-Branco, Gonçalo, Piehl, Fredrik
Published in Nature communications (13.08.2020)
Published in Nature communications (13.08.2020)
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