TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline
Glaubitz, Jeffrey C, Casstevens, Terry M, Lu, Fei, Harriman, James, Elshire, Robert J, Sun, Qi, Buckler, Edward S
Published in PloS one (28.02.2014)
Published in PloS one (28.02.2014)
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Journal Article
TASSEL: software for association mapping of complex traits in diverse samples
Bradbury, Peter J., Zhang, Zhiwu, Kroon, Dallas E., Casstevens, Terry M., Ramdoss, Yogesh, Buckler, Edward S.
Published in Bioinformatics (01.10.2007)
Published in Bioinformatics (01.10.2007)
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Journal Article
A multi‐trait multi‐locus stepwise approach for conducting GWAS on correlated traits
Fernandes, Samuel B., Casstevens, Terry M., Bradbury, Peter J., Lipka, Alexander E.
Published in The plant genome (01.06.2022)
Published in The plant genome (01.06.2022)
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Journal Article
Comprehensive genotyping of the USA national maize inbred seed bank
Romay, Maria C, Millard, Mark J, Glaubitz, Jeffrey C, Peiffer, Jason A, Swarts, Kelly L, Casstevens, Terry M, Elshire, Robert J, Acharya, Charlotte B, Mitchell, Sharon E, Flint-Garcia, Sherry A, McMullen, Michael D, Holland, James B, Buckler, Edward S, Gardner, Candice A
Published in Genome biology (11.06.2013)
Published in Genome biology (11.06.2013)
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Journal Article
Software engineering the mixed model for genome-wide association studies on large samples
Zhang, Zhiwu, Buckler, Edward S., Casstevens, Terry M., Bradbury, Peter J.
Published in Briefings in bioinformatics (01.11.2009)
Published in Briefings in bioinformatics (01.11.2009)
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Journal Article
Gramene: a bird's eye view of cereal genomes
Jaiswal, Pankaj, Ni, Junjian, Yap, Immanuel, Ware, Doreen, Spooner, William, Youens-Clark, Ken, Ren, Liya, Liang, Chengzhi, Zhao, Wei, Ratnapu, Kiran, Faga, Benjamin, Canaran, Payan, Fogleman, Molly, Hebbard, Claire, Avraham, Shuly, Schmidt, Steven, Casstevens, Terry M, Buckler, Edward S, Stein, Lincoln, McCouch, Susan
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Journal Article
Genetic Architecture of Domestication-Related Traits in Maize
Xue, Shang, Bradbury, Peter J, Casstevens, Terry, Holland, James B
Published in Genetics (Austin) (01.09.2016)
Published in Genetics (Austin) (01.09.2016)
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Journal Article
The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science
Bruskiewich, Richard, Senger, Martin, Davenport, Guy, Ruiz, Manuel, Rouard, Mathieu, Hazekamp, Tom, Takeya, Masaru, Doi, Koji, Satoh, Kouji, Costa, Marcos, Simon, Reinhard, Balaji, Jayashree, Akintunde, Akinnola, Mauleon, Ramil, Wanchana, Samart, Shah, Trushar, Anacleto, Mylah, Portugal, Arllet, Ulat, Victor Jun, Thongjuea, Supat, Braak, Kyle, Ritter, Sebastian, Dereeper, Alexis, Skofic, Milko, Rojas, Edwin, Martins, Natalia, Pappas, Georgios, Alamban, Ryan, Almodiel, Roque, Barboza, Lord Hendrix, Detras, Jeffrey, Manansala, Kevin, Mendoza, Michael Jonathan, Morales, Jeffrey, Peralta, Barry, Valerio, Rowena, Zhang, Yi, Yap, Jan Michael, Gregorio, Sergio, Hermocilla, Joseph, Echavez, Michael, Farmer, Andrew, Schiltz, Gary, Lee, Jennifer M., Casstevens, Terry, Jaiswal, Pankaj, Meintjes, Ayton, Wilkinson, Mark, Good, Benjamin, Wagner, James, Morris, Jane, Marshall, David, Collins, Anthony, Kikuchi, Shoshi, Metz, Thomas, McLaren, Graham, van Hintum, Theo
Published in International Journal of Plant Genomics (2008)
Published in International Journal of Plant Genomics (2008)
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Journal Article
rTASSEL: An R interface to TASSEL for analyzing genomic diversity
Monier, Brandon, Casstevens, Terry M., Bradbury, Peter J., Buckler, Edward S.
Published in Journal of open source software (10.08.2022)
Published in Journal of open source software (10.08.2022)
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Journal Article
A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction
Jensen, Sarah E., Charles, Jean Rigaud, Muleta, Kebede, Bradbury, Peter J., Casstevens, Terry, Deshpande, Santosh P., Gore, Michael A., Gupta, Rajeev, Ilut, Daniel C., Johnson, Lynn, Lozano, Roberto, Miller, Zachary, Ramu, Punna, Rathore, Abhishek, Romay, M. Cinta, Upadhyaya, Hari D., Varshney, Rajeev K., Morris, Geoffrey P., Pressoir, Gael, Buckler, Edward S., Ramstein, Guillaume P.
Published in The plant genome (01.03.2020)
Published in The plant genome (01.03.2020)
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Journal Article
Gramene database in 2010: updates and extensions
Youens-Clark, Ken, Buckler, Ed, Casstevens, Terry, Chen, Charles, DeClerck, Genevieve, Derwent, Paul, Dharmawardhana, Palitha, Jaiswal, Pankaj, Kersey, Paul, Karthikeyan, A.S, Lu, Jerry, McCouch, Susan R, Ren, Liya, Spooner, William, Stein, Joshua C, Thomason, Jim, Wei, Sharon, Ware, Doreen
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Journal Article
Gramene: a growing plant comparative genomics resource
Liang, Chengzhi, Jaiswal, Pankaj, Hebbard, Claire, Avraham, Shuly, Buckler, Edward S, Casstevens, Terry, Hurwitz, Bonnie, McCouch, Susan, Ni, Junjian, Pujar, Anuradha, Ravenscroft, Dean, Ren, Liya, Spooner, William, Tecle, Isaak, Thomason, Jim, Tung, Chih-wei, Wei, Xuehong, Yap, Immanuel, Youens-Clark, Ken, Ware, Doreen, Stein, Lincoln
Published in Nucleic acids research (01.01.2008)
Published in Nucleic acids research (01.01.2008)
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Journal Article
TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline: e90346
Glaubitz, Jeffrey C, Casstevens, Terry M, Lu, Fei, Harriman, James, Elshire, Robert J, Sun, Qi, Buckler, Edward S
Published in PloS one (01.02.2014)
Published in PloS one (01.02.2014)
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Journal Article
The Gramene Genetic Diversity Module: a resource for genotype-phenotype association analysis in grass species
Chen, Charles, DeClerck, Genevieve, Casstevens, Terry, Youens-Clark, Ken, Zhang, Jon, Ware, Doreen, Jaiswal, Pankaj, McCouch, Susan, Buckler, Edward
Published in Nature precedings (09.07.2010)
Published in Nature precedings (09.07.2010)
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Journal Article
The Practical Haplotype Graph, a platform for storing and using pangenomes for imputation
Bradbury, Peter, Casstevens, Terry, Jensen, Sarah E, Johnson, Lynn C, Miller, Zachary R, Monier, Brandon, Maria Cinta Romay, Song, Baoxing, Buckler, Edward S
Published in bioRxiv (28.08.2021)
Published in bioRxiv (28.08.2021)
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Paper
A sorghum Practical Haplotype Graph facilitates genome-wide imputation and cost-effective genomic prediction
Jensen, Sarah E, Jean Rigaud Charles, Kebede Muleta, Bradbury, Peter, Casstevens, Terry, Deshpande, Santosh P, Gore, Michael A, Gupta, Rajeev, Ilut, Daniel C, Johnson, Lynn, Lozano, Roberto, Miller, Zachary, Ramu, Punna, Rathore, Abhishek, M Cinta Romay, Upadhyaya, Hari D, Varshney, Rajeev K, Morris, Geoffrey P, Pressoir, Gael, Buckler, Edward S, Ramstein, Guillaume P
Published in bioRxiv (17.10.2019)
Published in bioRxiv (17.10.2019)
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