Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing
Casasent, Anna K., Schalck, Aislyn, Gao, Ruli, Sei, Emi, Long, Annalyssa, Pangburn, William, Casasent, Tod, Meric-Bernstam, Funda, Edgerton, Mary E., Navin, Nicholas E.
Published in Cell (11.01.2018)
Published in Cell (11.01.2018)
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Journal Article
Genome evolution in ductal carcinoma in situ: invasion of the clones
Casasent, Anna K, Edgerton, Mary, Navin, Nicholas E
Published in The Journal of pathology (01.01.2017)
Published in The Journal of pathology (01.01.2017)
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Journal Article
Learning to distinguish progressive and non-progressive ductal carcinoma in situ
Casasent, Anna K., Almekinders, Mathilde M., Mulder, Charlotta, Bhattacharjee, Proteeti, Collyar, Deborah, Thompson, Alastair M., Jonkers, Jos, Lips, Esther H., van Rheenen, Jacco, Hwang, E. Shelley, Nik-Zainal, Serena, Navin, Nicholas E., Wesseling, Jelle
Published in Nature reviews. Cancer (01.12.2022)
Published in Nature reviews. Cancer (01.12.2022)
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Journal Article
LKB1 coordinates neurite remodeling to drive synapse layer emergence in the outer retina
Burger, Courtney A, Alevy, Jonathan, Casasent, Anna K, Jiang, Danye, Albrecht, Nicholas E, Liang, Justine H, Hirano, Arlene A, Brecha, Nicholas C, Samuel, Melanie A
Published in eLife (07.05.2020)
Published in eLife (07.05.2020)
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A spatially resolved single-cell genomic atlas of the adult human breast
Kumar, Tapsi, Nee, Kevin, Wei, Runmin, He, Siyuan, Nguyen, Quy H., Bai, Shanshan, Blake, Kerrigan, Pein, Maren, Gong, Yanwen, Sei, Emi, Hu, Min, Casasent, Anna K., Thennavan, Aatish, Li, Jianzhuo, Tran, Tuan, Chen, Ken, Nilges, Benedikt, Kashikar, Nachiket, Braubach, Oliver, Ben Cheikh, Bassem, Nikulina, Nadya, Chen, Hui, Teshome, Mediget, Menegaz, Brian, Javaid, Huma, Nagi, Chandandeep, Montalvan, Jessica, Lev, Tatyana, Mallya, Sharmila, Tifrea, Delia F., Edwards, Robert, Lin, Erin, Parajuli, Ritesh, Hanson, Summer, Winocour, Sebastian, Thompson, Alastair, Lim, Bora, Lawson, Devon A., Kessenbrock, Kai, Navin, Nicholas
Published in Nature (London) (03.08.2023)
Published in Nature (London) (03.08.2023)
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Retinal patterns and the cellular repertoire of neuropsin (Opn5) retinal ganglion cells
D'Souza, Shane P., Swygart, David I., Wienbar, Sophia R., Upton, Brian A., Zhang, Kevin X., Mackin, Robert D., Casasent, Anna K., Samuel, Melanie A., Schwartz, Gregory W., Lang, Richard A.
Published in Journal of comparative neurology (1911) (01.06.2022)
Published in Journal of comparative neurology (1911) (01.06.2022)
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Archival single-cell genomics reveals persistent subclones during DCIS progression
Wang, Kaile, Kumar, Tapsi, Wang, Junke, Minussi, Darlan Conterno, Sei, Emi, Li, Jianzhuo, Tran, Tuan M., Thennavan, Aatish, Hu, Min, Casasent, Anna K., Xiao, Zhenna, Bai, Shanshan, Yang, Lei, King, Lorraine M., Shah, Vandna, Kristel, Petra, van der Borden, Carolien L., Marks, Jeffrey R., Zhao, Yuehui, Zurita, Amado J., Aparicio, Ana, Chapin, Brian, Ye, Jie, Zhang, Jianjun, Gibbons, Don L., Sawyer, Ellinor, Thompson, Alastair M., Futreal, Andrew, Hwang, E. Shelley, Wesseling, Jelle, Lips, Esther H., Navin, Nicholas E.
Published in Cell (31.08.2023)
Published in Cell (31.08.2023)
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Author Correction: Learning to distinguish progressive and non-progressive ductal carcinoma in situ
Casasent, Anna K., Almekinders, Mathilde M., Mulder, Charlotta, Bhattacharjee, Proteeti, Collyar, Deborah, Thompson, Alastair M., Jonkers, Jos, Lips, Esther H., van Rheenen, Jacco, Hwang, E. Shelley, Nik-Zainal, Serena, Navin, Nicholas E., Wesseling, Jelle
Published in Nature reviews. Cancer (01.02.2023)
Published in Nature reviews. Cancer (01.02.2023)
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Journal Article
Abstract 2375: Multiclonal invasion in breast cancer identified by single cell DNA sequencing
Casasent, Anna K., Long, Annalyssa N., Schalck, Aislyn, Sei, Emi, Gao, Ruli, Davis, Alexander, Wang, Yong, Edgerton, Mary E., Navin, Nicholas E.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
PCA-Plus: Enhanced principal component analysis with illustrative applications to batch effects and their quantitation
Zhang, Nianxiang, Casasent, Tod D, Casasent, Anna K, Kumar, Shwetha V, Wakefield, Chris, Broom, Bradley M, Weinstein, John N, Akbani, Rehan
Published in bioRxiv (03.01.2024)
Published in bioRxiv (03.01.2024)
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Paper
Cover Image, Volume 528, Issue 5
Jiang, Danye, Burger, Courtney A., Casasent, Anna K., Albrecht, Nicholas E., Li, Fenge, Samuel, Melanie A.
Published in Journal of comparative neurology (1911) (01.04.2020)
Published in Journal of comparative neurology (1911) (01.04.2020)
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Journal Article
Genomic analysis defines clonal relationships of ductal carcinoma in situ and recurrent invasive breast cancer
Lips, Esther H., Kumar, Tapsi, Megalios, Anargyros, Visser, Lindy L., Sheinman, Michael, Fortunato, Angelo, Shah, Vandna, Hoogstraat, Marlous, Sei, Emi, Mallo, Diego, Roman-Escorza, Maria, Ahmed, Ahmed A., Xu, Mingchu, van den Belt-Dusebout, Alexandra W., Brugman, Wim, Casasent, Anna K., Clements, Karen, Davies, Helen R., Fu, Liping, Grigoriadis, Anita, Hardman, Timothy M., King, Lorraine M., Krete, Marielle, Kristel, Petra, de Maaker, Michiel, Maley, Carlo C., Marks, Jeffrey R., Menegaz, Brian A., Mulder, Lennart, Nieboer, Frank, Nowinski, Salpie, Pinder, Sarah, Quist, Jelmar, Salinas-Souza, Carolina, Schaapveld, Michael, Schmidt, Marjanka K., Shaaban, Abeer M., Shami, Rana, Sridharan, Mathini, Zhang, John, Stobart, Hilary, Collyar, Deborah, Nik-Zainal, Serena, Wessels, Lodewyk F. A., Hwang, E. Shelley, Navin, Nicholas E., Futreal, P. Andrew, Thompson, Alastair M., Wesseling, Jelle, Sawyer, Elinor J.
Published in Nature genetics (01.06.2022)
Published in Nature genetics (01.06.2022)
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Abstract 5788: Single-cell and spatial transcriptomic mapping of human renal cell carcinoma brain metastases uncovers actionable immune-resistance targets
Hasanov, Elshad, Lam, Truong Nguyen Anh, Lin, Jerome, Reville, Patrick K., Hasanov, Merve, Casasent, Anna K., Shih, David, Hanalioglu, Sahin, Bilen, Mehmet Asim, Alhalabi, Omar, Babaoglu, Berrin, Baylarov, Baylar, Osunkoya, Adeboye O., Norberg, Lisa M., Gumin, Joy, Tran, Tuan M., Li, Jianzhuo, Hoang, Anh G., Chancoco, Haidee D., Kerrigan, Brittany C. Parker, Thompson, Erika J., Kim, Betty YS, Suki, Dima, Mut, Melike, Soylemezoglu, Figen, Genovese, Giannicola, Akdemir, Kadir C., Tawbi, Hussain A., Tannir, Nizar M., McAllister, Florencia, Davies, Michael A., Sharma, Padmanee, Huse, Jason, Lang, Frederick, Navin, Nicholas, Jonasch, Eric
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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