Getting personal with epigenetics: towards individual-specific epigenomic imputation with machine learning
Hawkins-Hooker, Alex, Visonà, Giovanni, Narendra, Tanmayee, Rojas-Carulla, Mateo, Schölkopf, Bernhard, Schweikert, Gabriele
Published in Nature communications (07.08.2023)
Published in Nature communications (07.08.2023)
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Journal Article
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
Schreiber, Jacob, Boix, Carles, Wook Lee, Jin, Li, Hongyang, Guan, Yuanfang, Chang, Chun-Chieh, Chang, Jen-Chien, Hawkins-Hooker, Alex, Schölkopf, Bernhard, Schweikert, Gabriele, Carulla, Mateo Rojas, Canakoglu, Arif, Guzzo, Francesco, Nanni, Luca, Masseroli, Marco, Carman, Mark James, Pinoli, Pietro, Hong, Chenyang, Yip, Kevin Y, Spence, Jeffrey P, Batra, Sanjit Singh, Song, Yun S, Mahony, Shaun, Zhang, Zheng, Tan, Wuwei, Shen, Yang, Sun, Yuanfei, Shi, Minyi, Adrian, Jessika, Sandstrom, Richard, Farrell, Nina, Halow, Jessica, Lee, Kristen, Jiang, Lixia, Yang, Xinqiong, Epstein, Charles, Strattan, J Seth, Bernstein, Bradley, Snyder, Michael, Kellis, Manolis, Stafford, William, Kundaje, Anshul
Published in Genome Biology (18.04.2023)
Published in Genome Biology (18.04.2023)
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Journal Article
DeepMAsED: evaluating the quality of metagenomic assemblies
Mineeva, Olga, Rojas-Carulla, Mateo, Ley, Ruth E, Schölkopf, Bernhard, Youngblut, Nicholas D
Published in Bioinformatics (01.05.2020)
Published in Bioinformatics (01.05.2020)
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Journal Article
Recommendations on compiling test datasets for evaluating artificial intelligence solutions in pathology
Homeyer, André, Geißler, Christian, Schwen, Lars Ole, Zakrzewski, Falk, Evans, Theodore, Strohmenger, Klaus, Westphal, Max, Bülow, Roman David, Kargl, Michaela, Karjauv, Aray, Munné-Bertran, Isidre, Retzlaff, Carl Orge, Romero-López, Adrià, Sołtysiński, Tomasz, Plass, Markus, Carvalho, Rita, Steinbach, Peter, Lan, Yu-Chia, Bouteldja, Nassim, Haber, David, Rojas-Carulla, Mateo, Vafaei Sadr, Alireza, Kraft, Matthias, Krüger, Daniel, Fick, Rutger, Lang, Tobias, Boor, Peter, Müller, Heimo, Hufnagl, Peter, Zerbe, Norman
Published in Modern pathology (01.12.2022)
Published in Modern pathology (01.12.2022)
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Journal Article
Publisher Correction to: Recommendations on compiling test datasets for evaluating artificial intelligence solutions in pathology
Homeyer, André, Geißler, Christian, Schwen, Lars Ole, Zakrzewski, Falk, Evans, Theodore, Strohmenger, Klaus, Westphal, Max, Bülow, Roman David, Kargl, Michaela, Karjauv, Aray, Munné-Bertran, Isidre, Retzlaff, Carl Orge, Romero-López, Adrià, Sołtysiński, Tomasz, Plass, Markus, Carvalho, Rita, Steinbach, Peter, Lan, Yu-Chia, Bouteldja, Nassim, Haber, David, Rojas-Carulla, Mateo, Vafaei Sadr, Alireza, Kraft, Matthias, Krüger, Daniel, Fick, Rutger, Lang, Tobias, Boor, Peter, Müller, Heimo, Hufnagl, Peter, Zerbe, Norman
Published in Modern pathology (01.12.2022)
Published in Modern pathology (01.12.2022)
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Journal Article
Learning Independent Causal Mechanisms
Parascandolo, Giambattista, Kilbertus, Niki, Rojas-Carulla, Mateo, Schölkopf, Bernhard
Year of Publication 04.12.2017
Year of Publication 04.12.2017
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Journal Article
GeNet: Deep Representations for Metagenomics
Rojas-Carulla, Mateo, Tolstikhin, Ilya, Luque, Guillermo, Youngblut, Nicholas, Ley, Ruth, Schölkopf, Bernhard
Year of Publication 30.01.2019
Year of Publication 30.01.2019
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Journal Article
Recommendations on test datasets for evaluating AI solutions in pathology
Homeyer, André, Geißler, Christian, Schwen, Lars Ole, Zakrzewski, Falk, Evans, Theodore, Strohmenger, Klaus, Westphal, Max, Bülow, Roman David, Kargl, Michaela, Aray Karjauv, Munné-Bertran, Isidre, Retzlaff, Carl Orge, Romero-López, Adrià, Sołtysiński, Tomasz, Plass, Markus, Carvalho, Rita, Steinbach, Peter, Yu-Chia, Lan, Bouteldja, Nassim, Haber, David, Rojas-Carulla, Mateo, Alireza Vafaei Sadr, Kraft, Matthias, Krüger, Daniel, Fick, Rutger, Lang, Tobias, Boor, Peter, Müller, Heimo, Hufnagl, Peter, Zerbe, Norman
Published in arXiv.org (21.04.2022)
Published in arXiv.org (21.04.2022)
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Journal Article
Avoiding Discrimination through Causal Reasoning
Kilbertus, Niki, Rojas-Carulla, Mateo, Parascandolo, Giambattista, Hardt, Moritz, Janzing, Dominik, Schölkopf, Bernhard
Year of Publication 08.06.2017
Year of Publication 08.06.2017
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Journal Article
Discriminative k-shot learning using probabilistic models
Bauer, Matthias, Rojas-Carulla, Mateo, Świątkowski, Jakub Bartłomiej, Schölkopf, Bernhard, Turner, Richard E
Year of Publication 01.06.2017
Year of Publication 01.06.2017
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Journal Article
Invariant Models for Causal Transfer Learning
Rojas-Carulla, Mateo, Schölkopf, Bernhard, Turner, Richard, Peters, Jonas
Year of Publication 19.07.2015
Year of Publication 19.07.2015
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Journal Article
Invariant Models for Causal Transfer Learning
Rojas-Carulla, Mateo, Schölkopf, Bernhard, Turner, Richard, Peters, Jonas
Published in arXiv.org (24.09.2018)
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Published in arXiv.org (24.09.2018)
Paper
Learning Independent Causal Mechanisms
Parascandolo, Giambattista, Kilbertus, Niki, Rojas-Carulla, Mateo, Schölkopf, Bernhard
Published in arXiv.org (08.09.2018)
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Published in arXiv.org (08.09.2018)
Paper
DeepMAsED: Evaluating the quality of metagenomic assemblies
Rojas-Carulla, Mateo, Ley, Ruth E, Schoelkopf, Bernhard, Youngblut, Nicholas D
Published in bioRxiv (10.09.2019)
Published in bioRxiv (10.09.2019)
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Paper
GeNet: Deep Representations for Metagenomics
Rojas-Carulla, Mateo, Tolstikhin, Ilya, Luque, Guillermo, Youngblut, Nicholas, Ley, Ruth, Schoelkopf, Bernhard
Published in bioRxiv (01.02.2019)
Published in bioRxiv (01.02.2019)
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Paper
GeNet: Deep Representations for Metagenomics
Rojas-Carulla, Mateo, Tolstikhin, Ilya, Luque, Guillermo, Youngblut, Nicholas, Ley, Ruth, Schölkopf, Bernhard
Published in arXiv.org (30.01.2019)
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Published in arXiv.org (30.01.2019)
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