A global ocean atlas of eukaryotic genes
Carradec, Quentin, Pelletier, Eric, Da Silva, Corinne, Alberti, Adriana, Seeleuthner, Yoann, Blanc-Mathieu, Romain, Lima-Mendez, Gipsi, Rocha, Fabio, Tirichine, Leila, Labadie, Karine, Kirilovsky, Amos, Bertrand, Alexis, Engelen, Stefan, Madoui, Mohammed-Amin, Méheust, Raphaël, Poulain, Julie, Romac, Sarah, Richter, Daniel J, Yoshikawa, Genki, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Searson, Sarah, Jaillon, Olivier, Aury, Jean-Marc, Karsenti, Eric, Sullivan, Matthew B, Sunagawa, Shinichi, Bork, Peer, Not, Fabrice, Hingamp, Pascal, Raes, Jeroen, Guidi, Lionel, Ogata, Hiroyuki, de Vargas, Colomban, Iudicone, Daniele, Bowler, Chris, Wincker, Patrick
Published in Nature communications (25.01.2018)
Published in Nature communications (25.01.2018)
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Journal Article
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean
Decelle, Johan, Carradec, Quentin, Pochon, Xavier, Henry, Nicolas, Romac, Sarah, Mahé, Frédéric, Dunthorn, Micah, Kourlaiev, Artem, Voolstra, Christian R., Wincker, Patrick, de Vargas, Colomban
Published in Current biology (19.11.2018)
Published in Current biology (19.11.2018)
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Journal Article
Diversity and ecological footprint of Global Ocean RNA viruses
Dominguez-Huerta, Guillermo, Zayed, Ahmed A, Wainaina, James M, Guo, Jiarong, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Mohssen, Mohamed, Zablocki, Olivier, Pelletier, Eric, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Bowler, Chris, Eveillard, Damien, Guidi, Lionel, Karsenti, Eric, Kuhn, Jens H, Ogata, Hiroyuki, Wincker, Patrick, Culley, Alexander, Chaffron, Samuel, Sullivan, Matthew B
Published in Science (American Association for the Advancement of Science) (10.06.2022)
Published in Science (American Association for the Advancement of Science) (10.06.2022)
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Journal Article
Pervasive tandem duplications and convergent evolution shape coral genomes
Noel, Benjamin, Denoeud, France, Rouan, Alice, Buitrago-López, Carol, Capasso, Laura, Poulain, Julie, Boissin, Emilie, Pousse, Mélanie, Da Silva, Corinne, Couloux, Arnaud, Armstrong, Eric, Carradec, Quentin, Cruaud, Corinne, Labadie, Karine, Lê-Hoang, Julie, Tambutté, Sylvie, Barbe, Valérie, Moulin, Clémentine, Bourdin, Guillaume, Iwankow, Guillaume, Romac, Sarah, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, J Michel, Forcioli, Didier, Furla, Paola, Galand, Pierre E, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sullivan, Matthew B, Sunagawa, Shinichi, Thomas, Olivier P, Troublé, Romain, Thurber, Rebecca Vega, Allemand, Denis, Planes, Serge, Gilson, Eric, Zoccola, Didier, Wincker, Patrick, Voolstra, Christian R, Aury, Jean-Marc
Published in Genome Biology (01.06.2023)
Published in Genome Biology (01.06.2023)
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Journal Article
Author Correction: A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Carradec, Quentin, Poulain, Julie, Boissin, Emilie, Hume, Benjamin C C, Voolstra, Christian R, Ziegler, Maren, Engelen, Stefan, Cruaud, Corinne, Planes, Serge, Wincker, Patrick
Published in Scientific reports (18.01.2021)
Published in Scientific reports (18.01.2021)
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Journal Article
Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean
Armstrong, Eric J, Lê-Hoang, Julie, Carradec, Quentin, Aury, Jean-Marc, Noel, Benjamin, Hume, Benjamin C C, Voolstra, Christian R, Poulain, Julie, Belser, Caroline, Paz-García, David A, Cruaud, Corinne, Labadie, Karine, Da Silva, Corinne, Moulin, Clémentine, Boissin, Emilie, Bourdin, Guillaume, Iwankow, Guillaume, Romac, Sarah, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, Michel, Forcioli, Didier, Furla, Paola, Galand, Pierre E, Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sullivan, Matthew B, Sunagawa, Shinichi, Thomas, Olivier P, Troublé, Romain, Thurber, Rebecca Vega, Zoccola, Didier, Planes, Serge, Allemand, Denis, Wincker, Patrick
Published in Nature communications (01.06.2023)
Published in Nature communications (01.06.2023)
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Journal Article
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Carradec, Quentin, Poulain, Julie, Boissin, Emilie, Hume, Benjamin C C, Voolstra, Christian R, Ziegler, Maren, Engelen, Stefan, Cruaud, Corinne, Planes, Serge, Wincker, Patrick
Published in Scientific reports (28.09.2020)
Published in Scientific reports (28.09.2020)
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Journal Article
Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
Guérin, Nina, Ciccarella, Marta, Flamant, Elisa, Frémont, Paul, Mangenot, Sophie, Istace, Benjamin, Noel, Benjamin, Belser, Caroline, Bertrand, Laurie, Labadie, Karine, Cruaud, Corinne, Romac, Sarah, Bachy, Charles, Gachenot, Martin, Pelletier, Eric, Alberti, Adriana, Jaillon, Olivier, Wincker, Patrick, Aury, Jean-Marc, Carradec, Quentin
Published in Communications biology (16.09.2022)
Published in Communications biology (16.09.2022)
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Journal Article
Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics
Vorobev, Alexey, Dupouy, Marion, Carradec, Quentin, Delmont, Tom O, Annamalé, Anita, Wincker, Patrick, Pelletier, Eric
Published in Genome research (01.04.2020)
Published in Genome research (01.04.2020)
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Journal Article
Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome
Zayed, Ahmed A, Wainaina, James M, Dominguez-Huerta, Guillermo, Pelletier, Eric, Guo, Jiarong, Mohssen, Mohamed, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Zablocki, Olivier, Cronin, Dylan, Solden, Lindsey, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Ruscheweyh, Hans-Joachim, Salazar, Guillem, Shatoff, Elan, Bundschuh, Ralf, Fredrick, Kurt, Kubatko, Laura S, Chaffron, Samuel, Culley, Alexander I, Sunagawa, Shinichi, Kuhn, Jens H, Wincker, Patrick, Sullivan, Matthew B, Acinas, Silvia G, Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Gorsky, Gabriel, Guidi, Lionel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Poulton, Nicole, Pesant, Stéphane, Sardet, Christian, Speich, Sabrinia, Stemmann, Lars, Sullivan, Matthew B, Sungawa, Shinichi, Wincker, Patrick
Published in Science (American Association for the Advancement of Science) (08.04.2022)
Published in Science (American Association for the Advancement of Science) (08.04.2022)
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Journal Article
Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Caputi, Luigi, Carradec, Quentin, Eveillard, Damien, Kirilovsky, Amos, Pelletier, Eric, Pierella Karlusich, Juan J., Rocha Jimenez Vieira, Fabio, Villar, Emilie, Chaffron, Samuel, Scalco, Eleonora, Acinas, Silvia G., Alberti, Adriana, Bertrand, Alexis, Biard, Tristan, Bittner, Lucie, Boccara, Martine, Brum, Jennifer R., Busseni, Greta, Carratalà, Anna, Claustre, Hervé, Coelho, Luis Pedro, Colin, Sébastien, D'Aniello, Salvatore, Da Silva, Corinne, Del Core, Marianna, Doré, Hugo, Kokoszka, Florian, Lejeusne, Christophe, Lepoivre, Cyrille, Lima‐Mendez, Gipsi, Lombard, Fabien, Lukeš, Julius, Maillet, Nicolas, Madoui, Mohammed‐Amin, Martinez, Elodie, Mazzocchi, Maria Grazia, Néou, Mario B., Paz‐Yepes, Javier, Poulain, Julie, Ramondenc, Simon, Romagnan, Jean‐Baptiste, Salvagio Manta, Daniela, Sanges, Remo, Speich, Sabrina, Sprovieri, Mario, Sunagawa, Shinichi, Tanaka, Atsuko, Tirichine, Leila, Trottier, Camille, Uitz, Julia, Veluchamy, Alaguraj, Veselá, Jana, Vincent, Flora, Yau, Sheree, Kandels‐Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Bork, Peer, Boss, Emmanuel, Vargas, Colomban, Follows, Michael J., Grimsley, Nigel, Hingamp, Pascal, Karsenti, Eric, Stemmann, Lars, Sullivan, Matthew B., Tagliabue, Alessandro, Garczarek, Laurence, d'Ortenzio, Fabrizio, Testor, Pierre, d'Alcalà, Maurizio Ribera, Wincker, Patrick, Bowler, Chris, Iudicone, Daniele, Acinas, Silvia G., Bork, Peer, Boss, Emmanuel, Bowler, Chris, Vargas, Colomban, Follows, Michael J., Gorsky, Gabriel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels‐Lewis, Stefanie, Krzic, Uros, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Raes, Jeroen, Reynaud, Emmanuel G., Sardet, Christian, Sieracki, Mike, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Velayoudon, Didier, Weissenbach, Jean, Wincker, Patrick
Published in Global biogeochemical cycles (01.03.2019)
Published in Global biogeochemical cycles (01.03.2019)
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Journal Article
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Seeleuthner, Yoann, Mondy, Samuel, Lombard, Vincent, Carradec, Quentin, Pelletier, Eric, Wessner, Marc, Leconte, Jade, Mangot, Jean-François, Poulain, Julie, Labadie, Karine, Logares, Ramiro, Sunagawa, Shinichi, de Berardinis, Véronique, Salanoubat, Marcel, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Searson, Sarah, Pesant, Stephane, Poulton, Nicole, Stepanauskas, Ramunas, Bork, Peer, Bowler, Chris, Hingamp, Pascal, Sullivan, Matthew B, Iudicone, Daniele, Massana, Ramon, Aury, Jean-Marc, Henrissat, Bernard, Karsenti, Eric, Jaillon, Olivier, Sieracki, Mike, de Vargas, Colomban, Wincker, Patrick
Published in Nature communications (22.01.2018)
Published in Nature communications (22.01.2018)
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Journal Article
Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals
Rouan, Alice, Pousse, Melanie, Djerbi, Nadir, Porro, Barbara, Bourdin, Guillaume, Carradec, Quentin, Hume, Benjamin Cc, Poulain, Julie, Lê-Hoang, Julie, Armstrong, Eric, Agostini, Sylvain, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Aury, Jean-Marc, Paz-García, David A, McMinds, Ryan, Giraud-Panis, Marie-Josèphe, Deshuraud, Romane, Ottaviani, Alexandre, Morini, Lycia Die, Leone, Camille, Wurzer, Lia, Tran, Jessica, Zoccola, Didier, Pey, Alexis, Moulin, Clémentine, Boissin, Emilie, Iwankow, Guillaume, Romac, Sarah, de Vargas, Colomban, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, Douville, Eric, Flores, Michel, Reynaud, Stéphanie, Thomas, Olivier P, Troublé, Romain, Thurber, Rebecca Vega, Planes, Serge, Allemand, Denis, Pesant, Stephane, Galand, Pierre E, Wincker, Patrick, Sunagawa, Shinichi, Röttinger, Eric, Furla, Paola, Voolstra, Christian R, Forcioli, Didier, Lombard, Fabien, Gilson, Eric
Published in Nature communications (01.06.2023)
Published in Nature communications (01.06.2023)
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Journal Article
Primary and secondary siRNA synthesis triggered by RNAs from food bacteria in the ciliate Paramecium tetraurelia
Carradec, Quentin, Götz, Ulrike, Arnaiz, Olivier, Pouch, Juliette, Simon, Martin, Meyer, Eric, Marker, Simone
Published in Nucleic acids research (18.02.2015)
Published in Nucleic acids research (18.02.2015)
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Journal Article
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
Zayed, Ahmed, Wainaina, James, Dominguez-Huerta, Guillermo, Pelletier, Eric, Guo, Jiarong, Mohssen, Mohamed, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Zablocki, Olivier, Cronin, Dylan, Solden, Lindsey, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Ruscheweyh, Hans-Joachim, Salazar, Guillem, Shatoff, Elan, Bundschuh, Ralf, Fredrick, Kurt, Kubatko, Laura, Chaffron, Samuel, Culley, Alexander, Sunagawa, Shinichi, Kuhn, Jens, Wincker, Patrick, Sullivan, Matthew, Acinas, Silvia, Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Gorsky, Gabriel, Guidi, Lionel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Poulton, Nicole, Pesant, Stéphane, Sardet, Christian, Speich, Sabrinia, Stemmann, Lars, Sullivan, Matthew, Sungawa, Shinichi, Wincker, Patrick
Published in Science (American Association for the Advancement of Science) (08.04.2022)
Published in Science (American Association for the Advancement of Science) (08.04.2022)
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Journal Article
A forward genetic screen reveals essential and non-essential RNAi factors in Paramecium tetraurelia
Marker, Simone, Carradec, Quentin, Tanty, Véronique, Arnaiz, Olivier, Meyer, Eric
Published in Nucleic acids research (17.06.2014)
Published in Nucleic acids research (17.06.2014)
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Journal Article
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
Belser, Caroline, Poulain, Julie, Labadie, Karine, Gavory, Frederick, Alberti, Adriana, Guy, Julie, Carradec, Quentin, Cruaud, Corinne, Da Silva, Corinne, Engelen, Stefan, Mielle, Paul, Perdereau, Aude, Samson, Gaelle, Gas, Shahinaz, Voolstra, Christian R, Galand, Pierre E, Flores, J Michel, Hume, Benjamin C C, Perna, Gabriela, Ziegler, Maren, Ruscheweyh, Hans-Joachim, Boissin, Emilie, Romac, Sarah, Bourdin, Guillaume, Iwankow, Guillaume, Moulin, Clémentine, Paz García, David A, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Forcioli, Didier, Furla, Paola, Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sunagawa, Shinichi, Thomas, Olivier P, Troublé, Romain, Thurber, Rebecca Vega, Zoccola, Didier, Scarpelli, Claude, Jacoby, E' Krame, Oliveira, Pedro H, Aury, Jean-Marc, Allemand, Denis, Planes, Serge, Wincker, Patrick
Published in Scientific data (01.06.2023)
Published in Scientific data (01.06.2023)
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Journal Article
Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation
Voolstra, Christian R., Hume, Benjamin C. C., Armstrong, Eric J., Mitushasi, Guinther, Porro, Barbara, Oury, Nicolas, Agostini, Sylvain, Boissin, Emilie, Poulain, Julie, Carradec, Quentin, Paz-García, David A., Zoccola, Didier, Magalon, Hélène, Moulin, Clémentine, Bourdin, Guillaume, Iwankow, Guillaume, Romac, Sarah, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, Michel, Furla, Paola, Galand, Pierre E., Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sullivan, Matthew B., Sunagawa, Shinichi, Thomas, Olivier P., Troublé, Romain, Thurber, Rebecca Vega, Wincker, Patrick, Planes, Serge, Allemand, Denis, Forcioli, Didier
Published in Npj Biodiversity (07.07.2023)
Published in Npj Biodiversity (07.07.2023)
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Retroviral envelope gene captures andsyncytinexaptation for placentation in marsupials
Cornelis, Guillaume, Vernochet, Cécile, Carradec, Quentin, Souquere, Sylvie, Mulot, Baptiste, Catzeflis, François, Nilsson, Maria A., Menzies, Brandon R., Renfree, Marilyn B., Pierron, Gérard, Zeller, Ulrich, Heidmann, Odile, Dupressoir, Anne, Heidmann, Thierry
Published in Proceedings of the National Academy of Sciences - PNAS (03.02.2015)
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Published in Proceedings of the National Academy of Sciences - PNAS (03.02.2015)
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Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection
Le Luyer, J, Schull, Q, Auffret, P, Lopez, P, Crusot, M, Belliard, C, Basset, C, Carradec, Q, Poulain, J, Planes, S, Saulnier, D
Published in Animal microbiome (07.05.2021)
Published in Animal microbiome (07.05.2021)
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