Strategies for sample labelling and library preparation in DNA metabarcoding studies
Bohmann, Kristine, Elbrecht, Vasco, Carøe, Christian, Bista, Iliana, Leese, Florian, Bunce, Michael, Yu, Douglas W., Seymour, Mathew, Dumbrell, Alex J., Creer, Simon
Published in Molecular ecology resources (01.05.2022)
Published in Molecular ecology resources (01.05.2022)
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Ancient and modern environmental DNA
Pedersen, Mikkel Winther, Overballe-Petersen, Søren, Ermini, Luca, Sarkissian, Clio Der, Haile, James, Hellstrom, Micaela, Spens, Johan, Thomsen, Philip Francis, Bohmann, Kristine, Cappellini, Enrico, Schnell, Ida Bærholm, Wales, Nathan A., Carøe, Christian, Campos, Paula F., Schmidt, Astrid M. Z., Gilbert, M. Thomas P., Hansen, Anders J., Orlando, Ludovic, Willerslev, Eske
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
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Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals
Bozzi, Davide, Rasmussen, Jacob A, Carøe, Christian, Sveier, Harald, Nordøy, Kristian, Gilbert, M Thomas P, Limborg, Morten T
Published in Animal microbiome (20.04.2021)
Published in Animal microbiome (20.04.2021)
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Bone biodeterioration-The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community
Eriksen, Anne Marie Høier, Nielsen, Tue Kjærgaard, Matthiesen, Henning, Carøe, Christian, Hansen, Lars Hestbjerg, Gregory, David John, Turner-Walker, Gordon, Collins, Matthew James, Gilbert, M Thomas P
Published in PloS one (15.10.2020)
Published in PloS one (15.10.2020)
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Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages
Ramos-Madrigal, Jazmín, Sinding, Mikkel-Holger S., Carøe, Christian, Mak, Sarah S.T., Niemann, Jonas, Samaniego Castruita, José A., Fedorov, Sergey, Kandyba, Alexander, Germonpré, Mietje, Bocherens, Hervé, Feuerborn, Tatiana R., Pitulko, Vladimir V., Pavlova, Elena Y., Nikolskiy, Pavel A., Kasparov, Aleksei K., Ivanova, Varvara V., Larson, Greger, Frantz, Laurent A.F., Willerslev, Eske, Meldgaard, Morten, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P., Gopalakrishnan, Shyam
Published in Current biology (11.01.2021)
Published in Current biology (11.01.2021)
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Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance
Nordahl Petersen, Thomas, Rasmussen, Simon, Hasman, Henrik, Carøe, Christian, Bælum, Jacob, Schultz, Anna Charlotte, Bergmark, Lasse, Svendsen, Christina A, Lund, Ole, Sicheritz-Pontén, Thomas, Aarestrup, Frank M
Published in Scientific reports (10.07.2015)
Published in Scientific reports (10.07.2015)
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The evolutionary history of extinct and living lions
de Manuel, Marc, Barnett, Ross, Sandoval-Velasco, Marcela, Yamaguchi, Nobuyuki, Vieira, Filipe Garrett, Mendoza, M. Lisandra Zepeda, Liu, Shiping, Martin, Michael D., Sinding, Mikkel-Holger S., Mak, Sarah S. T., Carøe, Christian, Liu, Shanlin, Guo, Chunxue, Zheng, Jiao, Zazula, Grant, Baryshnikov, Gennady, Eizirik, Eduardo, Koepfli, Klaus-Peter, Johnson, Warren E., Antunes, Agostinho, Sicheritz-Ponten, Thomas, Gopalakrishnan, Shyam, Larson, Greger, Yang, Huanming, O’Brien, Stephen J., Hansen, Anders J., Zhang, Guojie, Marques-Bonet, Tomas, Gilbert, M. Thomas P.
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
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Probing the genomic limits of de-extinction in the Christmas Island rat
Lin, Jianqing, Duchêne, David, Carøe, Christian, Smith, Oliver, Ciucani, Marta Maria, Niemann, Jonas, Richmond, Douglas, Greenwood, Alex D., MacPhee, Ross, Zhang, Guojie, Gopalakrishnan, Shyam, Gilbert, M. Thomas P.
Published in Current biology (11.04.2022)
Published in Current biology (11.04.2022)
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Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must
Sirén, Kimmo, Mak, Sarah Siu Tze, Melkonian, Chrats, Carøe, Christian, Swiegers, Jan Hendrik, Molenaar, Douwe, Fischer, Ulrich, Gilbert, M Thomas P
Published in Frontiers in microbiology (09.04.2019)
Published in Frontiers in microbiology (09.04.2019)
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Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain
van Dorp, Lucy, Gelabert, Pere, Rieux, Adrien, de Manuel, Marc, de-Dios, Toni, Gopalakrishnan, Shyam, Carøe, Christian, Sandoval-Velasco, Marcela, Fregel, Rosa, Olalde, Iñigo, Escosa, Raül, Aranda, Carles, Huijben, Silvie, Mueller, Ivo, Marquès-Bonet, Tomàs, Balloux, François, Gilbert, M Thomas P, Lalueza-Fox, Carles
Published in Molecular biology and evolution (01.03.2020)
Published in Molecular biology and evolution (01.03.2020)
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Dire wolves were the last of an ancient New World canid lineage
Perri, Angela R, Mitchell, Kieren J, Mouton, Alice, Álvarez-Carretero, Sandra, Hulme-Beaman, Ardern, Haile, James, Jamieson, Alexandra, Meachen, Julie, Lin, Audrey T, Schubert, Blaine W, Ameen, Carly, Antipina, Ekaterina E, Bover, Pere, Brace, Selina, Carmagnini, Alberto, Carøe, Christian, Samaniego Castruita, Jose A, Chatters, James C, Dobney, Keith, Dos Reis, Mario, Evin, Allowen, Gaubert, Philippe, Gopalakrishnan, Shyam, Gower, Graham, Heiniger, Holly, Helgen, Kristofer M, Kapp, Josh, Kosintsev, Pavel A, Linderholm, Anna, Ozga, Andrew T, Presslee, Samantha, Salis, Alexander T, Saremi, Nedda F, Shew, Colin, Skerry, Katherine, Taranenko, Dmitry E, Thompson, Mary, Sablin, Mikhail V, Kuzmin, Yaroslav V, Collins, Matthew J, Sinding, Mikkel-Holger S, Gilbert, M Thomas P, Stone, Anne C, Shapiro, Beth, Van Valkenburgh, Blaire, Wayne, Robert K, Larson, Greger, Cooper, Alan, Frantz, Laurent A F
Published in Nature (London) (04.03.2021)
Published in Nature (London) (04.03.2021)
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New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA
Wales, Nathan, Carøe, Christian, Sandoval-Velasco, Marcela, Gamba, Cristina, Barnett, Ross, Samaniego, José Alfredo, Ramos Madrigal, Jazmín, Orlando, Ludovic, Gilbert, M. Thomas P
Published in BioTechniques (01.12.2015)
Published in BioTechniques (01.12.2015)
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The origin and evolution of maize in the Southwestern United States
da Fonseca, Rute R, Smith, Bruce D, Wales, Nathan, Cappellini, Enrico, Skoglund, Pontus, Fumagalli, Matteo, Samaniego, José Alfredo, Carøe, Christian, Ávila-Arcos, María C, Hufnagel, David E, Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, Mattias, Arriaza, Bernardo, Willerslev, Eske, Nielsen, Rasmus, Hufford, Matthew B, Albrechtsen, Anders, Ross-Ibarra, Jeffrey, Gilbert, M Thomas P
Published in Nature plants (08.01.2015)
Published in Nature plants (08.01.2015)
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Population genomics of the muskox' resilience in the near absence of genetic variation
Pečnerová, Patrícia, Lord, Edana, Garcia‐Erill, Genís, Hanghøj, Kristian, Rasmussen, Malthe Sebro, Meisner, Jonas, Liu, Xiaodong, van der Valk, Tom, Santander, Cindy G., Quinn, Liam, Lin, Long, Liu, Shanlin, Carøe, Christian, Dalerum, Fredrik, Götherström, Anders, Måsviken, Johannes, Vartanyan, Sergey, Raundrup, Katrine, Al‐Chaer, Amal, Rasmussen, Linett, Hvilsom, Christina, Heide‐Jørgensen, Mads Peter, Sinding, Mikkel‐Holger S., Aastrup, Peter, Van Coeverden de Groot, Peter J., Schmidt, Niels Martin, Albrechtsen, Anders, Dalén, Love, Heller, Rasmus, Moltke, Ida, Siegismund, Hans Redlef
Published in Molecular ecology (01.01.2024)
Published in Molecular ecology (01.01.2024)
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Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull
Bro-Jørgensen, Maiken Hemme, Carøe, Christian, Vieira, Filipe G., Nestor, Sofia, Hallström, Ann, Gregersen, Kristian M., Etting, Vivian, Gilbert, M. Thomas P., Sinding, Mikkel-Holger S.
Published in Journal of archaeological science (01.11.2018)
Published in Journal of archaeological science (01.11.2018)
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ArcHives—combined palynological, genomic and lipid analysis of medieval wax seals
Kasso, Tuuli M., Enevold, Renée, Johns, Samuel, Rangel-Piñeros, Guillermo, Taurozzi, Alberto J., Sutherland, Alister, Ramsøe, Max, Angelova, Lora V., Roffet-Salque, Mélanie, Collins, Matthew J., Carøe, Christian
Published in Heritage science (17.01.2023)
Published in Heritage science (17.01.2023)
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The limits and potential of paleogenomic techniques for reconstructing grapevine domestication
Wales, Nathan, Ramos Madrigal, Jazmín, Cappellini, Enrico, Carmona Baez, Aldo, Samaniego Castruita, José Alfredo, Romero-Navarro, J. Alberto, Carøe, Christian, Ávila-Arcos, María C., Peñaloza, Fernando, Moreno-Mayar, J. Víctor, Gasparyan, Boris, Zardaryan, Diana, Bagoyan, Tamara, Smith, Alexia, Pinhasi, Ron, Bosi, Giovanna, Fiorentino, Girolamo, Grasso, Anna Maria, Celant, Alessandra, Bar-Oz, Guy, Tepper, Yotam, Hall, Allan, Scalabrin, Simone, Miculan, Mara, Morgante, Michele, Di Gaspero, Gabriele, Gilbert, M. Thomas P.
Published in Journal of archaeological science (01.08.2016)
Published in Journal of archaeological science (01.08.2016)
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A two-step metagenomics approach for the identification and mitochondrial DNA contig assembly of vertebrate prey from the blood meals of common vampire bats (Desmodus rotundus)
Chua, Physilia Y. S., Carøe, Christian, Crampton-Platt, Alex, Reyes-Avila, Claudia S., Jones, Gareth, Streicker, Daniel G., Bohmann, Kristine
Published in Metabarcoding and Metagenomics (07.04.2022)
Published in Metabarcoding and Metagenomics (07.04.2022)
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Interspecific Gene Flow Shaped the Evolution of the Genus Canis
Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, de Manuel Montero, Marc, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Sillero, Claudio, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.
Published in Current biology (02.12.2019)
Published in Current biology (02.12.2019)
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