Deep learning for biomedical image reconstruction: a survey
Ben Yedder, Hanene, Cardoen, Ben, Hamarneh, Ghassan
Published in The Artificial intelligence review (2021)
Published in The Artificial intelligence review (2021)
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Journal Article
SPECHT: Self-tuning Plausibility based object detection Enables quantification of Conflict in Heterogeneous multi-scale microscopy
Cardoen, Ben, Wong, Timothy, Alan, Parsa, Lee, Sieun, Matsubara, Joanne Aiko, Nabi, Ivan Robert, Hamarneh, Ghassan
Published in PloS one (29.12.2022)
Published in PloS one (29.12.2022)
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Journal Article
SPECHT: Self-tuning Plausibility based object detection Enables quantification of Conflict in Heterogeneous multi-scale microscopy
Ben Cardoen, Timothy Wong, Parsa Alan, Sieun Lee, Joanne Aiko Matsubara, Ivan Robert Nabi, Ghassan Hamarneh
Published in PloS one (29.12.2022)
Published in PloS one (29.12.2022)
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Journal Article
Super resolution microscopy and deep learning identify Zika virus reorganization of the endoplasmic reticulum
Long, Rory K M, Moriarty, Kathleen P, Cardoen, Ben, Gao, Guang, Vogl, A Wayne, Jean, François, Hamarneh, Ghassan, Nabi, Ivan R
Published in Scientific reports (01.12.2020)
Published in Scientific reports (01.12.2020)
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Journal Article
Basal Gp78-dependent mitophagy promotes mitochondrial health and limits mitochondrial ROS
Alan, Parsa, Vandevoorde, Kurt R., Joshi, Bharat, Cardoen, Ben, Gao, Guang, Mohammadzadeh, Yahya, Hamarneh, Ghassan, Nabi, Ivan R.
Published in Cellular and molecular life sciences : CMLS (01.11.2022)
Published in Cellular and molecular life sciences : CMLS (01.11.2022)
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Journal Article
Membrane contact site detection (MCS-DETECT) reveals dual control of rough mitochondria–ER contacts
Cardoen, Ben, Vandevoorde, Kurt R., Gao, Guang, Ortiz-Silva, Milene, Alan, Parsa, Liu, William, Tiliakou, Ellie, Vogl, A. Wayne, Hamarneh, Ghassan, Nabi, Ivan R.
Published in The Journal of cell biology (2024)
Published in The Journal of cell biology (2024)
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Journal Article
ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy
Cardoen, Ben, Yedder, Hanene Ben, Sharma, Anmol, Chou, Keng C, Nabi, Ivan Robert, Hamarneh, Ghassan
Published in IEEE transactions on medical imaging (01.06.2020)
Published in IEEE transactions on medical imaging (01.06.2020)
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Journal Article
DataCurator.jl: efficient, portable and reproducible validation, curation and transformation of large heterogeneous datasets using human-readable recipes compiled into machine-verifiable templates
Cardoen, Ben, Ben Yedder, Hanene, Lee, Sieun, Nabi, Ivan Robert, Hamarneh, Ghassan
Published in Bioinformatics advances (2023)
Published in Bioinformatics advances (2023)
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Journal Article
AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth
Nabi, Ivan R, Cardoen, Ben, Khater, Ismail M, Gao, Guang, Wong, Timothy H, Hamarneh, Ghassan
Year of Publication 26.05.2023
Year of Publication 26.05.2023
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Journal Article
Log-Paradox: Necessary and sufficient conditions for confounding statistically significant pattern reversal under the log-transform
Cardoen, Ben, Yedder, Hanene Ben, Lee, Sieun, Nabi, Ivan Robert, Hamarneh, Ghassan
Year of Publication 09.02.2023
Year of Publication 09.02.2023
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Journal Article
nERdy: network analysis of endoplasmic reticulum dynamics
Samudre, Ashwin, Gao, Guang, Cardoen, Ben, Nabi, Ivan Robert, Hamarneh, Ghassan
Published in bioRxiv (21.02.2024)
Published in bioRxiv (21.02.2024)
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Paper
Performance analysis of a PDEVS simulator supporting multiple synchronization protocols
Cardoen, Ben, Manhaeve, Stijn, Tuijn, Tim, Van Tendeloo, Yentl, Vanmechelen, Kurt, Vangheluwe, Hans, Broeckhove, Jan
Published in 2016 Symposium on Theory of Modeling and Simulation (TMS-DEVS) (01.04.2016)
Published in 2016 Symposium on Theory of Modeling and Simulation (TMS-DEVS) (01.04.2016)
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Conference Proceeding