Epigenetic maintenance of topological domains in the highly rearranged gibbon genome
Lazar, Nathan H, Nevonen, Kimberly A, O'Connell, Brendan, McCann, Christine, O'Neill, Rachel J, Green, Richard E, Meyer, Thomas J, Okhovat, Mariam, Carbone, Lucia
Published in Genome research (01.07.2018)
Published in Genome research (01.07.2018)
Get full text
Journal Article
Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion
Daughtry, Brittany L, Rosenkrantz, Jimi L, Lazar, Nathan H, Fei, Suzanne S, Redmayne, Nash, Torkenczy, Kristof A, Adey, Andrew, Yan, Melissa, Gao, Lina, Park, Byung, Nevonen, Kimberly A, Carbone, Lucia, Chavez, Shawn L
Published in Genome research (01.03.2019)
Published in Genome research (01.03.2019)
Get full text
Journal Article
Molecular contribution to embryonic aneuploidy and karyotypic complexity in initial cleavage divisions of mammalian development
Brooks, Kelsey E, Daughtry, Brittany L, Davis, Brett, Yan, Melissa Y, Fei, Suzanne S, Shepherd, Selma, Carbone, Lucia, Chavez, Shawn L
Published in Development (Cambridge) (01.04.2022)
Published in Development (Cambridge) (01.04.2022)
Get full text
Journal Article
Coevolution of Genome Architecture and Social Behavior
Rubenstein, Dustin R., Ågren, J. Arvid, Carbone, Lucia, Elde, Nels C., Hoekstra, Hopi E., Kapheim, Karen M., Keller, Laurent, Moreau, Corrie S., Toth, Amy L., Yeaman, Sam, Hofmann, Hans A.
Published in Trends in ecology & evolution (Amsterdam) (01.09.2019)
Published in Trends in ecology & evolution (Amsterdam) (01.09.2019)
Get full text
Journal Article
RNA-Seq of human whole blood: Evaluation of globin RNA depletion on Ribo-Zero library method
Harrington, Christina A., Fei, Suzanne S., Minnier, Jessica, Carbone, Lucia, Searles, Robert, Davis, Brett A., Ogle, Kimberly, Planck, Stephen R., Rosenbaum, James T., Choi, Dongseok
Published in Scientific reports (14.04.2020)
Published in Scientific reports (14.04.2020)
Get full text
Journal Article
RNA-seq from archival FFPE breast cancer samples: molecular pathway fidelity and novel discovery
Pennock, Nathan D, Jindal, Sonali, Horton, Wesley, Sun, Duanchen, Narasimhan, Jayasri, Carbone, Lucia, Fei, Suzanne S, Searles, Robert, Harrington, Christina A, Burchard, Julja, Weinmann, Sheila, Schedin, Pepper, Xia, Zheng
Published in BMC medical genomics (19.12.2019)
Published in BMC medical genomics (19.12.2019)
Get full text
Journal Article
Comparative Genomic Characterization of the Multimammate Mouse Mastomys coucha
Hardin, Aaron, Nevonen, Kimberly A, Eckalbar, Walter L, Carbone, Lucia, Ahituv, Nadav
Published in Molecular biology and evolution (01.12.2019)
Published in Molecular biology and evolution (01.12.2019)
Get full text
Journal Article
TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function
Okhovat, Mariam, VanCampen, Jake, Nevonen, Kimberly A., Harshman, Lana, Li, Weiyu, Layman, Cora E., Ward, Samantha, Herrera, Jarod, Wells, Jackson, Sheng, Rory R., Mao, Yafei, Ndjamen, Blaise, Lima, Ana C., Vigh-Conrad, Katinka A., Stendahl, Alexandra M., Yang, Ran, Fedorov, Lev, Matthews, Ian R., Easow, Sarah A., Chan, Dylan K., Jan, Taha A., Eichler, Evan E., Rugonyi, Sandra, Conrad, Donald F., Ahituv, Nadav, Carbone, Lucia
Published in Nature communications (07.12.2023)
Published in Nature communications (07.12.2023)
Get full text
Journal Article
Myeloid lineage enhancers drive oncogene synergy in CEBPA/CSF3R mutant acute myeloid leukemia
Braun, Theodore P., Okhovat, Mariam, Coblentz, Cody, Carratt, Sarah A., Foley, Amy, Schonrock, Zachary, Curtiss, Brittany M., Nevonen, Kimberly, Davis, Brett, Garcia, Brianna, LaTocha, Dorian, Weeder, Benjamin R., Grzadkowski, Michal R., Estabrook, Joey C., Manning, Hannah G., Watanabe-Smith, Kevin, Jeng, Sophia, Smith, Jenny L., Leonti, Amanda R., Ries, Rhonda E., McWeeney, Shannon, Di Genua, Cristina, Drissen, Roy, Nerlov, Claus, Meshinchi, Soheil, Carbone, Lucia, Druker, Brian J., Maxson, Julia E.
Published in Nature communications (29.11.2019)
Published in Nature communications (29.11.2019)
Get full text
Journal Article
Transcriptomic and epigenomic characterization of the developing bat wing
Eckalbar, Walter L, Schlebusch, Stephen A, Mason, Mandy K, Gill, Zoe, Parker, Ash V, Booker, Betty M, Nishizaki, Sierra, Muswamba-Nday, Christiane, Terhune, Elizabeth, Nevonen, Kimberly A, Makki, Nadja, Friedrich, Tara, VanderMeer, Julia E, Pollard, Katherine S, Carbone, Lucia, Wall, Jeff D, Illing, Nicola, Ahituv, Nadav
Published in Nature genetics (01.05.2016)
Published in Nature genetics (01.05.2016)
Get full text
Journal Article
DNA Methylation Analysis of Turner Syndrome BAV
Gutierrez, Jacob, Davis, Brett A, Nevonen, Kimberly A, Ward, Samantha, Carbone, Lucia, Maslen, Cheryl L
Published in Frontiers in genetics (31.05.2022)
Published in Frontiers in genetics (31.05.2022)
Get full text
Journal Article
Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach
Veeramah, Krishna R, Woerner, August E, Johnstone, Laurel, Gut, Ivo, Gut, Marta, Marques-Bonet, Tomas, Carbone, Lucia, Wall, Jeff D, Hammer, Michael F
Published in Genetics (Austin) (01.05.2015)
Published in Genetics (Austin) (01.05.2015)
Get full text
Journal Article
Author Correction: Myeloid lineage enhancers drive oncogene synergy in CEBPA/CSF3R mutant acute myeloid leukemia
Braun, Theodore P., Okhovat, Mariam, Coblentz, Cody, Carratt, Sarah A., Foley, Amy, Schonrock, Zachary, Curtiss, Brittany M., Nevonen, Kimberly, Davis, Brett, Garcia, Brianna, LaTocha, Dorian, Weeder, Benjamin R., Grzadkowski, Michal R., Estabrook, Joey C., Manning, Hannah G., Watanabe-Smith, Kevin, Jeng, Sophia, Smith, Jenny L., Leonti, Amanda R., Ries, Rhonda E., McWeeney, Shannon, Di Genua, Cristina, Drissen, Roy, Nerlov, Claus, Meshinchi, Soheil, Carbone, Lucia, Druker, Brian J., Maxson, Julia E.
Published in Nature communications (16.06.2022)
Published in Nature communications (16.06.2022)
Get full text
Journal Article
Age-Associated DNA Methylation Patterns Are Shared Between the Hippocampus and Peripheral Blood Cells
Harris, Christopher J, Davis, Brett A, Zweig, Jonathan A, Nevonen, Kimberly A, Quinn, Joseph F, Carbone, Lucia, Gray, Nora E
Published in Frontiers in genetics (06.03.2020)
Published in Frontiers in genetics (06.03.2020)
Get full text
Journal Article
A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons
Capozzi, Oronzo, Carbone, Lucia, Stanyon, Roscoe R, Marra, Annamaria, Yang, Fengtang, Whelan, Christopher W, de Jong, Pieter J, Rocchi, Mariano, Archidiacono, Nicoletta
Published in Genome research (01.12.2012)
Published in Genome research (01.12.2012)
Get full text
Journal Article
Stable Histone Methylation Changes at Proteoglycan Network Genes Following Ethanol Exposure
Gavin, David P, Hashimoto, Joel G, Lazar, Nathan H, Carbone, Lucia, Crabbe, John C, Guizzetti, Marina
Published in Frontiers in genetics (30.08.2018)
Published in Frontiers in genetics (30.08.2018)
Get full text
Journal Article
Inference of transposable element ancestry
Wacholder, Aaron C, Cox, Corey, Meyer, Thomas J, Ruggiero, Robert P, Vemulapalli, Vijetha, Damert, Annette, Carbone, Lucia, Pollock, David D
Published in PLoS genetics (01.08.2014)
Published in PLoS genetics (01.08.2014)
Get full text
Journal Article
Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution
Carbone, Lucia, Harris, R Alan, Vessere, Gery M, Mootnick, Alan R, Humphray, Sean, Rogers, Jane, Kim, Sung K, Wall, Jeffrey D, Martin, David, Jurka, Jerzy, Milosavljevic, Aleksandar, de Jong, Pieter J
Published in PLoS genetics (01.06.2009)
Published in PLoS genetics (01.06.2009)
Get full text
Journal Article
Ring chromosomes, breakpoint clusters, and neocentromeres in sarcomas
Macchia, Gemma, Nord, Karolin H., Zoli, Monica, Purgato, Stefania, D'Addabbo, Pietro, Whelan, Christopher W., Carbone, Lucia, Perini, Giovanni, Mertens, Fredrik, Rocchi, Mariano, Storlazzi, Clelia Tiziana
Published in Genes chromosomes & cancer (01.03.2015)
Published in Genes chromosomes & cancer (01.03.2015)
Get full text
Journal Article