Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Green, Richard E., Braun, Edward L., Armstrong, Joel, Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Vandewege, Michael W., St. John, John A., Capella-Gutiérrez, Salvador, Castoe, Todd A., Kern, Colin, Fujita, Matthew K., Opazo, Juan C., Jurka, Jerzy, Kojima, Kenji K., Caballero, Juan, Hubley, Robert M., Smit, Arian F., Platt, Roy N., Lavoie, Christine A., Ramakodi, Meganathan P., Finger, John W., Suh, Alexander, Isberg, Sally R., Miles, Lee, Chong, Amanda Y., Jaratlerdsiri, Weerachai, Gongora, Jaime, Moran, Christopher, Iriarte, Andrés, McCormack, John, Burgess, Shane C., Edwards, Scott V., Lyons, Eric, Williams, Christina, Breen, Matthew, Howard, Jason T., Gresham, Cathy R., Peterson, Daniel G., Schmitz, Jürgen, Pollock, David D., Haussler, David, Triplett, Eric W., Zhang, Guojie, Irie, Naoki, Jarvis, Erich D., Brochu, Christopher A., Schmidt, Carl J., McCarthy, Fiona M., Faircloth, Brant C., Hoffmann, Federico G., Glenn, Travis C., Gabaldón, Toni, Paten, Benedict, Ray, David A.
Published in Science (American Association for the Advancement of Science) (12.12.2014)
Published in Science (American Association for the Advancement of Science) (12.12.2014)
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Journal Article
Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships
Sánchez-Valle, Jon, Tejero, Héctor, Fernández, José María, Juan, David, Urda-García, Beatriz, Capella-Gutiérrez, Salvador, Al-Shahrour, Fátima, Tabarés-Seisdedos, Rafael, Baudot, Anaïs, Pancaldi, Vera, Valencia, Alfonso
Published in Nature communications (05.06.2020)
Published in Nature communications (05.06.2020)
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Journal Article
Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes
Núñez-Carpintero, Iker, Rigau, Maria, Bosio, Mattia, O’Connor, Emily, Spendiff, Sally, Azuma, Yoshiteru, Topf, Ana, Thompson, Rachel, ’t Hoen, Peter A. C., Chamova, Teodora, Tournev, Ivailo, Guergueltcheva, Velina, Laurie, Steven, Beltran, Sergi, Capella-Gutiérrez, Salvador, Cirillo, Davide, Lochmüller, Hanns, Valencia, Alfonso
Published in Nature communications (28.02.2024)
Published in Nature communications (28.02.2024)
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Journal Article
DEBBIE: The Open Access Database of Experimental Scaffolds and Biomaterials Built Using an Automated Text Mining Pipeline
Corvi, Javier O, McKitrick, Austin, Fernández, José M, Fuenteslópez, Carla V, Gelpí, Josep L, Ginebra, Maria-Pau, Capella-Gutierrez, Salvador, Hakimi, Osnat
Published in Advanced healthcare materials (01.10.2023)
Published in Advanced healthcare materials (01.10.2023)
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Journal Article
The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives
Pognan, François, Steger-Hartmann, Thomas, Díaz, Carlos, Blomberg, Niklas, Bringezu, Frank, Briggs, Katharine, Callegaro, Giulia, Capella-Gutierrez, Salvador, Centeno, Emilio, Corvi, Javier, Drew, Philip, Drewe, William C, Fernández, José M, Furlong, Laura I, Guney, Emre, Kors, Jan A, Mayer, Miguel Angel, Pastor, Manuel, Piñero, Janet, Ramírez-Anguita, Juan Manuel, Ronzano, Francesco, Rowell, Philip, Saüch-Pitarch, Josep, Valencia, Alfonso, van de Water, Bob, van der Lei, Johan, van Mulligen, Erik, Sanz, Ferran
Published in Pharmaceuticals (Basel, Switzerland) (08.03.2021)
Published in Pharmaceuticals (Basel, Switzerland) (08.03.2021)
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Journal Article
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
Dohm, Juliane C., Minoche, André E., Holtgräwe, Daniela, Capella-Gutiérrez, Salvador, Zakrzewski, Falk, Tafer, Hakim, Rupp, Oliver, Sörensen, Thomas Rosleff, Stracke, Ralf, Reinhardt, Richard, Goesmann, Alexander, Kraft, Thomas, Schulz, Britta, Stadler, Peter F., Schmidt, Thomas, Gabaldón, Toni, Lehrach, Hans, Weisshaar, Bernd, Himmelbauer, Heinz
Published in Nature (London) (23.01.2014)
Published in Nature (London) (23.01.2014)
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Journal Article
genome of melon (Cucumis melo L.)
Garcia-Mas, Jordi, Benjak, Andrej, Sanseverino, Walter, Bourgeois, Michael, Mir, Gisela, González, Víctor M, Hénaff, Elizabeth, Câmara, Francisco, Cozzuto, Luca, Lowy, Ernesto, Alioto, Tyler, Capella-Gutiérrez, Salvador, Blanca, Jose, Cañizares, Joaquín, Ziarsolo, Pello, Gonzalez-Ibeas, Daniel, Rodríguez-Moreno, Luis, Droege, Marcus, Du, Lei, Alvarez-Tejado, Miguel, Lorente-Galdos, Belen, Melé, Marta, Yang, Luming, Weng, Yiqun, Navarro, Arcadi, Marques-Bonet, Tomas, Aranda, Miguel A, Nuez, Fernando, Picó, Belén, Gabaldón, Toni, Roma, Guglielmo, Guigó, Roderic, Casacuberta, Josep M, Arús, Pere, Puigdomènech, Pere
Published in Proceedings of the National Academy of Sciences - PNAS (17.07.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (17.07.2012)
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Journal Article
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
Collén, Jonas, Porcel, Betina, Carré, Wilfrid, Ball, Steven G., Chaparro, Cristian, Tonon, Thierry, Barbeyron, Tristan, Michel, Gurvan, Noel, Benjamin, Valentin, Klaus, Elias, Marek, Artiguenave, François, Arun, Alok, Aury, Jean-Marc, Barbosa-Neto, José F., Bothwell, John H., Bouget, François-Yves, Brillet, Loraine, Cabello-Hurtado, Francisco, Capella-Gutiérrez, Salvador, Charrier, Bénédicte, Cladière, Lionel, Cock, J. Mark, Coelho, Susana M., Colleoni, Christophe, Czjzek, Mirjam, Da Silva, Corinne, Delage, Ludovic, Denoeud, France, Deschamps, Philippe, Dittami, Simon M., Gabaldón, Toni, Gachon, Claire M. M., Groisillier, Agnès, Hervé, Cécile, Jabbari, Kamel, Katinka, Michael, Kloareg, Bernard, Kowalczyk, Nathalie, Labadie, Karine, Leblanc, Catherine, Lopez, Pascal J., McLachlan, Deirdre H., Meslet-Cladiere, Laurence, Moustafa, Ahmed, Nehr, Zofia, Collén, Pi Nyvall, Panaud, Olivier, Partensky, Frédéric, Poulain, Julie, Rensing, Stefan A., Rousvoal, Sylvie, Samson, Gaelle, Symeonidi, Aikaterini, Weissenbach, Jean, Zambounis, Antonios, Wincker, Patrick, Boyen, Catherine
Published in Proceedings of the National Academy of Sciences - PNAS (26.03.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.03.2013)
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Journal Article
Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
Capella-Gutiérrez, Salvador, Marcet-Houben, Marina, Gabaldón, Toni
Published in BMC biology (31.05.2012)
Published in BMC biology (31.05.2012)
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Journal Article
Standardized benchmarking in the quest for orthologs
Altenhoff, Adrian M, Boeckmann, Brigitte, Capella-Gutierrez, Salvador, Dalquen, Daniel A, DeLuca, Todd, Forslund, Kristoffer, Huerta-Cepas, Jaime, Linard, Benjamin, Pereira, Cécile, Pryszcz, Leszek P, Schreiber, Fabian, da Silva, Alan Sousa, Szklarczyk, Damian, Train, Clément-Marie, Bork, Peer, Lecompte, Odile, von Mering, Christian, Xenarios, Ioannis, Sjölander, Kimmen, Jensen, Lars Juhl, Martin, Maria J, Muffato, Matthieu, Gabaldón, Toni, Lewis, Suzanna E, Thomas, Paul D, Sonnhammer, Erik, Dessimoz, Christophe
Published in Nature methods (01.05.2016)
Published in Nature methods (01.05.2016)
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Journal Article
Genomic history of the origin and domestication of common bean unveils its closest sister species
Rendón-Anaya, Martha, Montero-Vargas, Josaphat M, Saburido-Álvarez, Soledad, Vlasova, Anna, Capella-Gutierrez, Salvador, Ordaz-Ortiz, José Juan, Aguilar, O Mario, Vianello-Brondani, Rosana P, Santalla, Marta, Delaye, Luis, Gabaldón, Toni, Gepts, Paul, Winkler, Robert, Guigó, Roderic, Delgado-Salinas, Alfonso, Herrera-Estrella, Alfredo
Published in Genome Biology (29.03.2017)
Published in Genome Biology (29.03.2017)
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Journal Article
High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation
Sebé-Pedrós, Arnau, Peña, Marcia Ivonne, Capella-Gutiérrez, Salvador, Antó, Meritxell, Gabaldón, Toni, Ruiz-Trillo, Iñaki, Sabidó, Eduard
Published in Developmental cell (24.10.2016)
Published in Developmental cell (24.10.2016)
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Journal Article
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Abascal, Federico, Corvelo, André, Cruz, Fernando, Villanueva-Cañas, José L, Vlasova, Anna, Marcet-Houben, Marina, Martínez-Cruz, Begoña, Cheng, Jade Yu, Prieto, Pablo, Quesada, Víctor, Quilez, Javier, Li, Gang, García, Francisca, Rubio-Camarillo, Miriam, Frias, Leonor, Ribeca, Paolo, Capella-Gutiérrez, Salvador, Rodríguez, José M, Câmara, Francisco, Lowy, Ernesto, Cozzuto, Luca, Erb, Ionas, Tress, Michael L, Rodriguez-Ales, Jose L, Ruiz-Orera, Jorge, Reverter, Ferran, Casas-Marce, Mireia, Soriano, Laura, Arango, Javier R, Derdak, Sophia, Galán, Beatriz, Blanc, Julie, Gut, Marta, Lorente-Galdos, Belen, Andrés-Nieto, Marta, López-Otín, Carlos, Valencia, Alfonso, Gut, Ivo, García, José L, Guigó, Roderic, Murphy, William J, Ruiz-Herrera, Aurora, Marques-Bonet, Tomas, Roma, Guglielmo, Notredame, Cedric, Mailund, Thomas, Albà, M Mar, Gabaldón, Toni, Alioto, Tyler, Godoy, José A
Published in Genome Biology (14.12.2016)
Published in Genome Biology (14.12.2016)
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Journal Article
The Quest for Orthologs benchmark service and consensus calls in 2020
Altenhoff, Adrian M, Garrayo-Ventas, Javier, Cosentino, Salvatore, Emms, David, Glover, Natasha M, Hernández-Plaza, Ana, Nevers, Yannis, Sundesha, Vicky, Szklarczyk, Damian, Fernández, José M, Codó, Laia, for Orthologs Consortium, the Quest, Gelpi, Josep Ll, Huerta-Cepas, Jaime, Iwasaki, Wataru, Kelly, Steven, Lecompte, Odile, Muffato, Matthieu, Martin, Maria J, Capella-Gutierrez, Salvador, Thomas, Paul D, Sonnhammer, Erik, Dessimoz, Christophe
Published in Nucleic acids research (02.07.2020)
Published in Nucleic acids research (02.07.2020)
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Journal Article
ELIXIR‐EXCELERATE: establishing Europe's data infrastructure for the life science research of the future
Harrow, Jennifer, Hancock, John, Blomberg, Niklas, Blomberg, Niklas, Brunak, Søren, Capella‐Gutierrez, Salvador, Durinx, Christine, Evelo, Chris T., Goble, Carole, Gut, Ivo, Ison, Jon, Keane, Thomas, Leskošek, Brane, Matyska, Luděk, McEntyre, Johanna, Miguel, Célia, Navarro, Arcadi, Newhouse, Steven, Nyrönen, Tommi, Palagi, Patricia, Persson, Bengt, Pommier, Cyril, Rambla, Jordi, Roos, Marco, Rustici, Gabriella, Smith, Andrew, Valencia, Alfonso, van Gelder, Celia, Vondrasek, Jiri, Willassen, Nils Peder, Arenas, Juan, Parkinson, Helen, Finn, Robert D, Beltran, Sergi, Matalonga, Leslie, Hurst, Hannah, Kersey, Paul, Lappalainen, Ilkka, Kahlem, Pascal, Saunders, Gary, Sarntivijai, Sirarat, Drysdale, Rachel, Tedds, Johnathan, Lanfear, Jeremy, Harrow, Jennifer
Published in The EMBO journal (15.03.2021)
Published in The EMBO journal (15.03.2021)
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Journal Article
Transcriptomic analysis of a psammophyte food crop, sand rice (Agriophyllum squarrosum) and identification of candidate genes essential for sand dune adaptation
Zhao, Pengshan, Capella-Gutiérrez, Salvador, Shi, Yong, Zhao, Xin, Chen, Guoxiong, Gabaldón, Toni, Ma, Xiao-Fei
Published in BMC genomics (07.10.2014)
Published in BMC genomics (07.10.2014)
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Journal Article
Gearing up to handle the mosaic nature of life in the quest for orthologs
Forslund, Kristoffer, Pereira, Cecile, Capella-Gutierrez, Salvador, da Silva, Alan Sousa, Altenhoff, Adrian, Huerta-Cepas, Jaime, Muffato, Matthieu, Patricio, Mateus, Vandepoele, Klaas, Ebersberger, Ingo, Blake, Judith, Fernández Breis, Jesualdo Tomás, Boeckmann, Brigitte, Gabaldón, Toni, Sonnhammer, Erik, Dessimoz, Christophe, Lewis, Suzanna
Published in Bioinformatics (15.01.2018)
Published in Bioinformatics (15.01.2018)
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Journal Article
COVID-19 Flow-Maps an open geographic information system on COVID-19 and human mobility for Spain
Ponce-de-Leon, Miguel, del Valle, Javier, Fernandez, José María, Bernardo, Marc, Cirillo, Davide, Sanchez-Valle, Jon, Smith, Matthew, Capella-Gutierrez, Salvador, Gullón, Tania, Valencia, Alfonso
Published in Scientific data (30.11.2021)
Published in Scientific data (30.11.2021)
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Journal Article
The landscape of expression and alternative splicing variation across human traits
García-Pérez, Raquel, Ramirez, Jose Miguel, Ripoll-Cladellas, Aida, Chazarra-Gil, Ruben, Oliveros, Winona, Soldatkina, Oleksandra, Bosio, Mattia, Rognon, Paul Joris, Capella-Gutierrez, Salvador, Calvo, Miquel, Reverter, Ferran, Guigó, Roderic, Aguet, François, Ferreira, Pedro G., Ardlie, Kristin G., Melé, Marta
Published in Cell genomics (11.01.2023)
Published in Cell genomics (11.01.2023)
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Journal Article