K -mer-based machine learning method to classify LTR-retrotransposons in plant genomes
Orozco-Arias, Simon, Candamil-Cortés, Mariana S, Jaimes, Paula A, Piña, Johan S, Tabares-Soto, Reinel, Guyot, Romain, Isaza, Gustavo
Published in PeerJ (San Francisco, CA) (19.05.2021)
Published in PeerJ (San Francisco, CA) (19.05.2021)
Get full text
Journal Article
Machine learning applications on intratumoral heterogeneity in glioblastoma using single-cell RNA sequencing data
Arteaga-Arteaga, Harold Brayan, Candamil-Cortés, Mariana S, Breaux, Brian, Guillen-Rondon, Pablo, Orozco-Arias, Simon, Tabares-Soto, Reinel
Published in Briefings in functional genomics (10.11.2023)
Published in Briefings in functional genomics (10.11.2023)
Get full text
Journal Article
Analysis of fruit ripening in Theobroma cacao pod husk based on untargeted metabolomics
Gallego, Adriana M., Zambrano, Romer A., Zuluaga, Martha, Camargo Rodríguez, Anyela V., Candamil Cortés, Mariana S., Romero Vergel, Angela P., Arboleda Valencia, Jorge W.
Published in Phytochemistry (Oxford) (01.11.2022)
Published in Phytochemistry (Oxford) (01.11.2022)
Get full text
Journal Article
Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes
Orozco-Arias, Simon, Humberto Lopez-Murillo, Luis, Candamil-Cortés, Mariana S, Arias, Maradey, Jaimes, Paula A, Rossi Paschoal, Alexandre, Tabares-Soto, Reinel, Isaza, Gustavo, Guyot, Romain
Published in Briefings in bioinformatics (19.01.2023)
Published in Briefings in bioinformatics (19.01.2023)
Get full text
Journal Article
Automatic curation of LTR retrotransposon libraries from plant genomes through machine learning
Orozco-Arias, Simon, Candamil-Cortes, Mariana S., Jaimes, Paula A., Valencia-Castrillon, Estiven, Tabares-Soto, Reinel, Isaza, Gustavo, Guyot, Romain
Published in Journal of integrative bioinformatics (30.09.2022)
Published in Journal of integrative bioinformatics (30.09.2022)
Get full text
Journal Article
InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning
Orozco-Arias, Simon, Jaimes, Paula A, Candamil, Mariana S, Jiménez-Varón, Cristian Felipe, Tabares-Soto, Reinel, Isaza, Gustavo, Guyot, Romain
Published in Genes (28.01.2021)
Published in Genes (28.01.2021)
Get full text
Journal Article
SENMAP: A Convolutional Neural Network Architecture for Curation of LTR-RT Libraries from Plant Genomes
Orozco-Arias, Simon, Candamil-Cortes, Mariana S., Valencia-Castrillon, Estiven, Jaimes, Paula A., Orozco, Nicolas Tobon, Arias-Mendoza, Maradey, Tabares-Soto, Reinel, Guyot, Romain, Isaza, Gustavo
Published in 2021 IEEE 2nd International Congress of Biomedical Engineering and Bioengineering (CI-IB&BI) (13.10.2021)
Published in 2021 IEEE 2nd International Congress of Biomedical Engineering and Bioengineering (CI-IB&BI) (13.10.2021)
Get full text
Conference Proceeding