Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools
Pineda-Peña, Andrea-Clemencia, Faria, Nuno Rodrigues, Imbrechts, Stijn, Libin, Pieter, Abecasis, Ana Barroso, Deforche, Koen, Gómez-López, Arley, Camacho, Ricardo J., de Oliveira, Tulio, Vandamme, Anne-Mieke
Published in Infection, genetics and evolution (01.10.2013)
Published in Infection, genetics and evolution (01.10.2013)
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Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update
Bennett, Diane E, Camacho, Ricardo J, Otelea, Dan, Kuritzkes, Daniel R, Fleury, Hervé, Kiuchi, Mark, Heneine, Walid, Kantor, Rami, Jordan, Michael R, Schapiro, Jonathan M, Vandamme, Anne-Mieke, Sandstrom, Paul, Boucher, Charles A B, van de Vijver, David, Rhee, Soo-Yon, Liu, Tommy F, Pillay, Deenan, Shafer, Robert W
Published in PloS one (06.03.2009)
Published in PloS one (06.03.2009)
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Transmission of Drug-Resistant HIV-1 Is Stabilizing in Europe
Vercauteren, Jurgen, Wensing, Annemarie M. J., van de Vijver, David A. M. C., Albert, Jan, Balotta, Claudia, Hamouda, Osamah, Kücherer, Claudia, Struck, Daniel, Schmit, Jean-Claude, Åsjö, Birgitta, Bruckova, Marie, Camacho, Ricardo J., Clotet, Bonaventura, Coughlan, Suzie, Grossman, Zehava, Horban, Andrzej, Korn, Klaus, Kostrikis, Leondios, Nielsen, Claus, Paraskevis, Dimitrios, Poljak, Mario, Puchhammer-Stöckl, Elisabeth, Riva, Chiara, Ruiz, Lidia, Salminen, Mika, Schuurman, Rob, Sonnerborg, Anders, Stanekova, Danica, Stanojevic, Maja, Vandamme, Anne-Mieke, Boucher, Charles A. B.
Published in The Journal of infectious diseases (15.11.2009)
Published in The Journal of infectious diseases (15.11.2009)
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Development of HIV Drug Resistance in a Cohort of Adults on First-Line Antiretroviral Therapy in Tanzania during the Stavudine Era
Sangeda, Raphael Z., Gómes, Perpétua, Rhee, Soo-Yon, Mosha, Fausta, Camacho, Ricardo J., Van Wijngaerden, Eric, Lyamuya, Eligius F., Vandamme, Anne-Mieke
Published in Microbiology research (01.12.2021)
Published in Microbiology research (01.12.2021)
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Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A
Faria, Nuno R, Hodges-Mameletzis, Ioannis, Silva, Joana C, Rodés, Berta, Erasmus, Smit, Paolucci, Stefania, Ruelle, Jean, Pieniazek, Danuta, Taveira, Nuno, Treviño, Ana, Gonçalves, Maria F, Jallow, Sabelle, Xu, Li, Camacho, Ricardo J, Soriano, Vincent, Goubau, Patrick, de Sousa, João D, Vandamme, Anne-Mieke, Suchard, Marc A, Lemey, Philippe
Published in Journal of general virology (01.04.2012)
Published in Journal of general virology (01.04.2012)
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Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon
Faria, Nuno R., Suchard, Marc A., Abecasis, Ana, Sousa, João D., Ndembi, Nicaise, Bonfim, Idalina, Camacho, Ricardo J., Vandamme, Anne-Mieke, Lemey, Philippe
Published in Infection, genetics and evolution (01.03.2012)
Published in Infection, genetics and evolution (01.03.2012)
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Effect of Natural Polymorphisms in the HIV-1 CRF02_AG Protease on Protease Inhibitor Hypersusceptibility
Santos, André F. A, Tebit, Denis M, Lalonde, Matthew S, Abecasis, Ana B, Ratcliff, Annette, Camacho, Ricardo J, Diaz, Ricardo S, Herchenröder, Ottmar, Soares, Marcelo A, Arts, Eric J
Published in Antimicrobial Agents and Chemotherapy (01.05.2012)
Published in Antimicrobial Agents and Chemotherapy (01.05.2012)
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Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape
Theys, Kristof, Deforche, Koen, Beheydt, Gertjan, Moreau, Yves, van Laethem, Kristel, Lemey, Philippe, Camacho, Ricardo J, Rhee, Soo-Yon, Shafer, Robert W, Van Wijngaerden, Eric, Vandamme, Anne-Mieke
Published in BMC bioinformatics (03.08.2010)
Published in BMC bioinformatics (03.08.2010)
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Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology
Vasylyeva, Tetyana I, du Plessis, Louis, Pineda-Peña, Andrea C, Kühnert, Denise, Lemey, Philippe, Vandamme, Anne-Mieke, Gomes, Perpétua, Camacho, Ricardo J, Pybus, Oliver G, Abecasis, Ana B, Faria, Nuno R
Published in The Journal of infectious diseases (19.06.2019)
Published in The Journal of infectious diseases (19.06.2019)
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Full genome sequence of three isolates of hepatitis C virus subtype 4b from Portugal
Koletzki, Diana, Dumont, Stéphanie, Vermeiren, Hans, Peixe, Paula, Nina, Jaime, Camacho, Ricardo J, Stuyver, Lieven J
Published in Archives of virology (01.01.2009)
Published in Archives of virology (01.01.2009)
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Pharmacy refill adherence outperforms self-reported methods in predicting HIV therapy outcome in resource-limited settings
Sangeda, Raphael Z, Mosha, Fausta, Prosperi, Mattia, Aboud, Said, Vercauteren, Jurgen, Camacho, Ricardo J, Lyamuya, Eligius F, Van Wijngaerden, Eric, Vandamme, Anne-Mieke
Published in BMC public health (04.10.2014)
Published in BMC public health (04.10.2014)
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Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia
Angelis, Konstantinos, Albert, Jan, Mamais, Ioannis, Magiorkinis, Gkikas, Hatzakis, Angelos, Hamouda, Osamah, Struck, Daniel, Vercauteren, Jurgen, Wensing, Annemarie M. J., Alexiev, Ivailo, Åsjö, Birgitta, Balotta, Claudia, Camacho, Ricardo J., Coughlan, Suzie, Griskevicius, Algirdas, Grossman, Zehava, Horban, Andrzej, Kostrikis, Leondios G., Lepej, Snjezana, Liitsola, Kirsi, Linka, Marek, Nielsen, Claus, Otelea, Dan, Paredes, Roger, Poljak, Mario, Puchhammer-Stöckl, Elisabeth, Schmit, Jean-Claude, Sönnerborg, Anders, Staneková, Danica, Stanojevic, Maja, Boucher, Charles A. B., Kaplan, Lauren, Vandamme, Anne-Mieke, Paraskevis, Dimitrios
Published in The Journal of infectious diseases (01.06.2015)
Published in The Journal of infectious diseases (01.06.2015)
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Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals
Winand, Raf, Theys, Kristof, Eusébio, Mónica, Aerts, Jan, Camacho, Ricardo J, Gomes, Perpetua, Suchard, Marc A, Vandamme, Anne-Mieke, Abecasis, Ana B
Published in AIDS (London) (24.09.2015)
Published in AIDS (London) (24.09.2015)
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Antiretroviral Drug Resistance in Human Immunodeficiency Virus Type 2
NTEMGWA, Michel L, D'AQUIN TONI, Thomas, BRENNER, Bluma G, CAMACHO, Ricardo J, WAINBERG, Mark A
Published in Antimicrobial agents and chemotherapy (01.09.2009)
Published in Antimicrobial agents and chemotherapy (01.09.2009)
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Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of Baseline Resistance Mutations
Theys, Kristof, Van Laethem, Kristel, Gomes, Perpetua, Baele, Guy, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Camacho, Ricardo J, Abecasis, Ana B
Published in AIDS research and human retroviruses (01.05.2016)
Published in AIDS research and human retroviruses (01.05.2016)
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HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics
Abecasis, Ana B, Wensing, Annemarie M J, Paraskevis, Dimitris, Vercauteren, Jurgen, Theys, Kristof, Van de Vijver, David A M C, Albert, Jan, Asjö, Birgitta, Balotta, Claudia, Beshkov, Danail, Camacho, Ricardo J, Clotet, Bonaventura, De Gascun, Cillian, Griskevicius, Algis, Grossman, Zehava, Hamouda, Osamah, Horban, Andrzej, Kolupajeva, Tatjana, Korn, Klaus, Kostrikis, Leon G, Kücherer, Claudia, Liitsola, Kirsi, Linka, Marek, Nielsen, Claus, Otelea, Dan, Paredes, Roger, Poljak, Mario, Puchhammer-Stöckl, Elisabeth, Schmit, Jean-Claude, Sönnerborg, Anders, Stanekova, Danika, Stanojevic, Maja, Struck, Daniel, Boucher, Charles A B, Vandamme, Anne-Mieke
Published in Retrovirology (14.01.2013)
Published in Retrovirology (14.01.2013)
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The global spread of HIV-1 subtype B epidemic
Magiorkinis, Gkikas, Angelis, Konstantinos, Mamais, Ioannis, Katzourakis, Aris, Hatzakis, Angelos, Albert, Jan, Lawyer, Glenn, Hamouda, Osamah, Struck, Daniel, Vercauteren, Jurgen, Wensing, Annemarie, Alexiev, Ivailo, Åsjö, Birgitta, Balotta, Claudia, Gomes, Perpétua, Camacho, Ricardo J., Coughlan, Suzie, Griskevicius, Algirdas, Grossman, Zehava, Horban, Anders, Kostrikis, Leondios G., Lepej, Snjezana J., Liitsola, Kirsi, Linka, Marek, Nielsen, Claus, Otelea, Dan, Paredes, Roger, Poljak, Mario, Puchhammer-Stöckl, Elizabeth, Schmit, Jean Claude, Sönnerborg, Anders, Staneková, Danica, Stanojevic, Maja, Stylianou, Dora C., Boucher, Charles A.B., Nikolopoulos, Georgios, Vasylyeva, Tetyana, Friedman, Samuel R., van de Vijver, David, Angarano, Gioacchino, Chaix, Marie-Laure, de Luca, Andrea, Korn, Klaus, Loveday, Clive, Soriano, Vincent, Yerly, Sabine, Zazzi, Mauricio, Vandamme, Anne-Mieke, Paraskevis, Dimitrios
Published in Infection, genetics and evolution (01.12.2016)
Published in Infection, genetics and evolution (01.12.2016)
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European recommendations for the clinical use of HIV drug resistance testing: 2011 update
Vandamme, Anne-Mieke, Camacho, Ricardo J, Ceccherini-Silberstein, Francesca, de Luca, Andreu, Palmisano, Lucia, Paraskevis, Dimitrios, Paredes, Roger, Poljak, Mario, Schmit, Jean-Claude, Soriano, Vincent, Walter, Hauke, Sönnerborg, Anders
Published in AIDS reviews (01.04.2011)
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Published in AIDS reviews (01.04.2011)
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Discordant predictions of residual activity could impact dolutegravir prescription upon raltegravir failure
Theys, Kristof, Abecasis, Ana, Libin, Pieter, Gomes, Perpétua, Cabanas, Joaquim, Camacho, Ricardo J, Van Laethem, Kristel
Published in Journal of clinical virology (01.09.2015)
Published in Journal of clinical virology (01.09.2015)
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RegaDB: community-driven data management and analysis for infectious diseases
Libin, Pieter, Beheydt, Gertjan, Deforche, Koen, Imbrechts, Stijn, Ferreira, Fossie, Van Laethem, Kristel, Theys, Kristof, Carvalho, Ana Patricia, Cavaco-Silva, Joana, Lapadula, Giuseppe, Torti, Carlo, Assel, Matthias, Wesner, Stefan, Snoeck, Joke, Ruelle, Jean, De Bel, Annelies, Lacor, Patrick, De Munter, Paul, Van Wijngaerden, Eric, Zazzi, Maurizio, Kaiser, Rolf, Ayouba, Ahidjo, Peeters, Martine, de Oliveira, Tulio, Alcantara, Luiz C J, Grossman, Zehava, Sloot, Peter, Otelea, Dan, Paraschiv, Simona, Boucher, Charles, Camacho, Ricardo J, Vandamme, Anne-Mieke
Published in Bioinformatics (01.06.2013)
Published in Bioinformatics (01.06.2013)
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