Flickr30k Entities: Collecting Region-to-Phrase Correspondences for Richer Image-to-Sentence Models
Plummer, Bryan A., Wang, Liwei, Cervantes, Chris M., Caicedo, Juan C., Hockenmaier, Julia, Lazebnik, Svetlana
Published in International journal of computer vision (01.05.2017)
Published in International journal of computer vision (01.05.2017)
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Journal Article
CellProfiler 3.0: Next-generation image processing for biology
McQuin, Claire, Goodman, Allen, Chernyshev, Vasiliy, Kamentsky, Lee, Cimini, Beth A, Karhohs, Kyle W, Doan, Minh, Ding, Liya, Rafelski, Susanne M, Thirstrup, Derek, Wiegraebe, Winfried, Singh, Shantanu, Becker, Tim, Caicedo, Juan C, Carpenter, Anne E
Published in PLoS biology (03.07.2018)
Published in PLoS biology (03.07.2018)
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Journal Article
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl
Caicedo, Juan C., Goodman, Allen, Karhohs, Kyle W., Cimini, Beth A., Ackerman, Jeanelle, Haghighi, Marzieh, Heng, CherKeng, Becker, Tim, Doan, Minh, McQuin, Claire, Rohban, Mohammad, Singh, Shantanu, Carpenter, Anne E.
Published in Nature methods (01.12.2019)
Published in Nature methods (01.12.2019)
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Journal Article
Applications in image-based profiling of perturbations
Caicedo, Juan C, Singh, Shantanu, Carpenter, Anne E
Published in Current opinion in biotechnology (01.06.2016)
Published in Current opinion in biotechnology (01.06.2016)
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Journal Article
Flickr30k Entities: Collecting Region-to-Phrase Correspondences for Richer Image-to-Sentence Models
Plummer, Bryan A., Liwei Wang, Cervantes, Chris M., Caicedo, Juan C., Hockenmaier, Julia, Lazebnik, Svetlana
Published in 2015 IEEE International Conference on Computer Vision (ICCV) (01.12.2015)
Published in 2015 IEEE International Conference on Computer Vision (ICCV) (01.12.2015)
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Conference Proceeding
Journal Article
Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
Caicedo, Juan C., Roth, Jonathan, Goodman, Allen, Becker, Tim, Karhohs, Kyle W., Broisin, Matthieu, Molnar, Csaba, McQuin, Claire, Singh, Shantanu, Theis, Fabian J., Carpenter, Anne E.
Published in Cytometry. Part A (01.09.2019)
Published in Cytometry. Part A (01.09.2019)
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Journal Article
Predicting compound activity from phenotypic profiles and chemical structures
Moshkov, Nikita, Becker, Tim, Yang, Kevin, Horvath, Peter, Dancik, Vlado, Wagner, Bridget K., Clemons, Paul A., Singh, Shantanu, Carpenter, Anne E., Caicedo, Juan C.
Published in Nature communications (08.04.2023)
Published in Nature communications (08.04.2023)
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Journal Article
Pretransplantation Portal Vein Recanalization and Transjugular Intrahepatic Portosystemic Shunt Creation for Chronic Portal Vein Thrombosis: Final Analysis of a 61-Patient Cohort
Thornburg, Bartley, Desai, Kush, Hickey, Ryan, Hohlastos, Elias, Kulik, Laura, Ganger, Daniel, Baker, Talia, Abecassis, Michael, Caicedo, Juan C., Ladner, Daniela, Fryer, Jonathan, Riaz, Ahsun, Lewandowski, Robert J., Salem, Riad
Published in Journal of vascular and interventional radiology (01.12.2017)
Published in Journal of vascular and interventional radiology (01.12.2017)
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Journal Article
Learning representations for image-based profiling of perturbations
Moshkov, Nikita, Bornholdt, Michael, Benoit, Santiago, Smith, Matthew, McQuin, Claire, Goodman, Allen, Senft, Rebecca A., Han, Yu, Babadi, Mehrtash, Horvath, Peter, Cimini, Beth A., Carpenter, Anne E., Singh, Shantanu, Caicedo, Juan C.
Published in Nature communications (21.02.2024)
Published in Nature communications (21.02.2024)
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Journal Article
Image-based cell phenotyping with deep learning
Pratapa, Aditya, Doron, Michael, Caicedo, Juan C.
Published in Current opinion in chemical biology (01.12.2021)
Published in Current opinion in chemical biology (01.12.2021)
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Journal Article
Collaborative Personalization of Image Enhancement
Kapoor, Ashish, Caicedo, Juan C., Lischinski, Dani, Kang, Sing Bing
Published in International journal of computer vision (01.05.2014)
Published in International journal of computer vision (01.05.2014)
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Journal Article
Content-based histopathology image retrieval using a kernel-based semantic annotation framework
Caicedo, Juan C., González, Fabio A., Romero, Eduardo
Published in Journal of biomedical informatics (01.08.2011)
Published in Journal of biomedical informatics (01.08.2011)
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Journal Article
Active Object Localization with Deep Reinforcement Learning
Caicedo, Juan C., Lazebnik, Svetlana
Published in 2015 IEEE International Conference on Computer Vision (ICCV) (01.12.2015)
Published in 2015 IEEE International Conference on Computer Vision (ICCV) (01.12.2015)
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Conference Proceeding
Journal Article
Data-analysis strategies for image-based cell profiling
Caicedo, Juan C, Cooper, Sam, Heigwer, Florian, Warchal, Scott, Qiu, Peng, Molnar, Csaba, Vasilevich, Aliaksei S, Barry, Joseph D, Bansal, Harmanjit Singh, Kraus, Oren, Wawer, Mathias, Paavolainen, Lassi, Herrmann, Markus D, Rohban, Mohammad, Hung, Jane, Hennig, Holger, Concannon, John, Smith, Ian, Clemons, Paul A, Singh, Shantanu, Rees, Paul, Horvath, Peter, Linington, Roger G, Carpenter, Anne E
Published in Nature methods (01.09.2017)
Published in Nature methods (01.09.2017)
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Journal Article
Weakly Supervised Learning of Single-Cell Feature Embeddings
Caicedo, Juan C., McQuin, Claire, Goodman, Allen, Singh, Shantanu, Carpenter, Anne E.
Published in 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition (01.06.2018)
Published in 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition (01.06.2018)
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Conference Proceeding
Journal Article
Ischemic cholangiopathy after controlled donation after cardiac death liver transplantation: a meta-analysis
Jay, Colleen L, Lyuksemburg, Vadim, Ladner, Daniela P, Wang, Edward, Caicedo, Juan C, Holl, Jane L, Abecassis, Michael M, Skaro, Anton I
Published in Annals of surgery (01.02.2011)
Published in Annals of surgery (01.02.2011)
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Journal Article
Objective assessment of stored blood quality by deep learning
Doan, Minh, Sebastian, Joseph A., Caicedo, Juan C., Siegert, Stefanie, Roch, Aline, Turner, Tracey R., Mykhailova, Olga, Pinto, Ruben N., McQuin, Claire, Goodman, Allen, Parsons, Michael J., Wolkenhauer, Olaf, Hennig, Holger, Singh, Shantanu, Wilson, Anne, Acker, Jason P., Rees, Paul, Kolios, Michael C., Carpenter, Anne E.
Published in Proceedings of the National Academy of Sciences - PNAS (01.09.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (01.09.2020)
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Journal Article
Black Patients With Cirrhosis Have Higher Mortality and Lower Transplant Rates: Results From a Metropolitan Cohort Study
Mazumder, Nikhilesh R., Simpson, Dinee, Atiemo, Kofi, Jackson, Kathryn, Zhao, Lihui, Daud, Amna, Kho, Abel, Gabra, Lauren G., Caicedo, Juan C., Levitsky, Josh, Ladner, Daniela P.
Published in Hepatology (Baltimore, Md.) (01.08.2021)
Published in Hepatology (Baltimore, Md.) (01.08.2021)
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Journal Article