Integration of Cryo-EM Model Building Software in Scipion
Martínez, M, Jiménez-Moreno, A, Maluenda, D, Ramírez-Aportela, E, Melero, R, Cuervo, A, Conesa, P, del Caño, L, Fonseca, Y. C, Sánchez-García, R, Strelak, D, Conesa, J. J, Fernández-Giménez, E, de Isidro, F, Sorzano, C. O. S, Carazo, J. M, Marabini, R
Published in Journal of chemical information and modeling (26.05.2020)
Published in Journal of chemical information and modeling (26.05.2020)
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On bias, variance, overfitting, gold standard and consensus in single‐particle analysis by cryo‐electron microscopy
Sorzano, C. O. S., Jiménez-Moreno, A., Maluenda, D., Martínez, M., Ramírez-Aportela, E., Krieger, J., Melero, R., Cuervo, A., Conesa, J., Filipovic, J., Conesa, P., del Caño, L., Fonseca, Y. C., Jiménez-de la Morena, J., Losana, P., Sánchez-García, R., Strelak, D., Fernández-Giménez, E., de Isidro-Gómez, F. P., Herreros, D., Vilas, J. L., Marabini, R., Carazo, J. M.
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2022)
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2022)
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Journal Article
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy
Sorzano, C. O. S., Jiménez, A., Mota, J., Vilas, J. L., Maluenda, D., Martínez, M., Ramírez-Aportela, E., Majtner, T., Segura, J., Sánchez-García, R., Rancel, Y., del Caño, L., Conesa, P., Melero, R., Jonic, S., Vargas, J., Cazals, F., Freyberg, Z., Krieger, J., Bahar, I., Marabini, R., Carazo, J. M.
Published in Acta crystallographica. Section F, Structural biology communications (01.01.2019)
Published in Acta crystallographica. Section F, Structural biology communications (01.01.2019)
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Journal Article
Flexible workflows for on‐the‐fly electron‐microscopy single‐particle image processing using Scipion
Maluenda, D., Majtner, T., Horvath, P., Vilas, J. L., Jiménez-Moreno, A., Mota, J., Ramírez-Aportela, E., Sánchez-García, R., Conesa, P., del Caño, L., Rancel, Y., Fonseca, Y., Martínez, M., Sharov, G., García, C.A., Strelak, D., Melero, R., Marabini, R., Carazo, J. M., Sorzano, C. O. S.
Published in Acta crystallographica. Section D, Biological crystallography. (01.10.2019)
Published in Acta crystallographica. Section D, Biological crystallography. (01.10.2019)
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Journal Article
Image processing tools for the validation of CryoEM maps
Sorzano, C. O. S, Vilas, J. L, Ramírez-Aportela, E, Krieger, J, del Hoyo, D, Herreros, D, Fernandez-Giménez, E, Marchán, D, Macías, J. R, Sánchez, I, del Caño, L, Fonseca-Reyna, Y, Conesa, P, García-Mena, A, Burguet, J, García Condado, J, Méndez García, J, Martínez, M, Muñoz-Barrutia, A, Marabini, R, Vargas, J, Carazo, J. M
Published in Faraday discussions (08.11.2022)
Published in Faraday discussions (08.11.2022)
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Journal Article
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM
Sorzano, C.O.S., Semchonok, D., Lin, S.-C., Lo, Y.-C., Vilas, J.L., Jiménez-Moreno, A., Gragera, M., Vacca, S., Maluenda, D., Martínez, M., Ramírez-Aportela, E., Melero, R., Cuervo, A., Conesa, J.J., Conesa, P., Losana, P., Caño, L. del, de la Morena, J. Jiménez, Fonseca, Y.C., Sánchez-García, R., Strelak, D., Fernández-Giménez, E., de Isidro, F., Herreros, D., Kastritis, P.L., Marabini, R., Bruce, B.D., Carazo, J.M.
Published in Journal of structural biology (01.03.2021)
Published in Journal of structural biology (01.03.2021)
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Journal Article
Cryo-EM and Single-Particle Analysis with Scipion
Jiménez-Moreno, A., del Caño, L., Martínez, M., Ramírez-Aportela, E., Cuervo, A., Melero, R., Sánchez-García, R., Strelak, D., Fernández-Giménez, E., de Isidro-Gómez, F.P., Herreros, D., Conesa, P., Fonseca, Y., Maluenda, D., Jiménez de la Morena, J., Macías, J.R., Losana, P., Marabini, R., Carazo, J.M., Sorzano, C.O.S.
Published in Journal of visualized experiments (29.05.2021)
Published in Journal of visualized experiments (29.05.2021)
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Increased fitness and plasticity of an invasive species in its introduced range: a study using Senecio pterophorus
Caño, L, Escarré, J, Fleck, I, Blanco-Moreno, J.M, Sans, F.X
Published in The Journal of ecology (01.05.2008)
Published in The Journal of ecology (01.05.2008)
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A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
Conesa, P., Gómez-Blanco, J., Marabini, R., Carazo, J. M., del Caño, L., Melero, R., Kazemi, M., Vilas, J. L., de la Rosa-Trevín, J. M., Otón, J., Vargas, Javier, Sorzano, Carlos Oscar S., Cuenca, J.
Published in BioMed research international (01.01.2017)
Published in BioMed research international (01.01.2017)
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Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
de la Rosa-Trevín, J.M., Quintana, A., del Cano, L., Zaldívar, A., Foche, I., Gutiérrez, J., Gómez-Blanco, J., Burguet-Castell, J., Cuenca-Alba, J., Abrishami, V., Vargas, J., Otón, J., Sharov, G., Vilas, J.L., Navas, J., Conesa, P., Kazemi, M., Marabini, R., Sorzano, C.O.S., Carazo, J.M.
Published in Journal of structural biology (01.07.2016)
Published in Journal of structural biology (01.07.2016)
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Journal Article
Multifractal approach for a biological porous media: Human dentin case
Sánchez‐Chávez, H. D., Flores‐Cano, L., Santiago‐Hernández, A., García‐Soriano, A. A.
Published in Microscopy research and technique (01.01.2024)
Published in Microscopy research and technique (01.01.2024)
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Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks
Ruzzo, Elizabeth K., Pérez-Cano, Laura, Jung, Jae-Yoon, Wang, Lee-kai, Kashef-Haghighi, Dorna, Hartl, Chris, Singh, Chanpreet, Xu, Jin, Hoekstra, Jackson N., Leventhal, Olivia, Leppä, Virpi M., Gandal, Michael J., Paskov, Kelley, Stockham, Nate, Polioudakis, Damon, Lowe, Jennifer K., Prober, David A., Geschwind, Daniel H., Wall, Dennis P.
Published in Cell (08.08.2019)
Published in Cell (08.08.2019)
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