Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study
Cotten, Matthew, PhD, Watson, Simon J, PhD, Kellam, Paul, Prof, Al-Rabeeah, Abdullah A, FRCS, Makhdoom, Hatem Q, PhD, Assiri, Abdullah, MD, Al-Tawfiq, Jaffar A, MD, Alhakeem, Rafat F, MD, Madani, Hossam, PhD, AlRabiah, Fahad A, MD, Hajjar, Sami Al, MD, Al-nassir, Wafa N, MD, Albarrak, Ali, MD, Flemban, Hesham, MD, Balkhy, Hanan H, MD, Alsubaie, Sarah, MD, Palser, Anne L, PhD, Gall, Astrid, Dr Med Vet, Bashford-Rogers, Rachael, MChem, Rambaut, Andrew, Prof, Zumla, Alimuddin I, Prof, Memish, Ziad A, Prof
Published in The Lancet (British edition) (14.12.2013)
Published in The Lancet (British edition) (14.12.2013)
Get full text
Journal Article
Hospital Outbreak of Middle East Respiratory Syndrome Coronavirus
Assiri, Abdullah, McGeer, Allison, Perl, Trish M, Price, Connie S, Al Rabeeah, Abdullah A, Cummings, Derek A.T, Alabdullatif, Zaki N, Assad, Maher, Almulhim, Abdulmohsen, Makhdoom, Hatem, Madani, Hossam, Alhakeem, Rafat, Al-Tawfiq, Jaffar A, Cotten, Matthew, Watson, Simon J, Kellam, Paul, Zumla, Alimuddin I, Memish, Ziad A
Published in New England Journal of Medicine (01.08.2013)
Published in New England Journal of Medicine (01.08.2013)
Get full text
Journal Article
Web Resource
Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya
Kiyuka, Patience K, Agoti, Charles N, Munywoki, Patrick K, Njeru, Regina, Bett, Anne, Otieno, James R, Otieno, Grieven P, Kamau, Everlyn, Clark, Taane G, van der Hoek, Lia, Kellam, Paul, Nokes, D James, Cotten, Matthew
Published in The Journal of Infectious Diseases (05.05.2018)
Published in The Journal of Infectious Diseases (05.05.2018)
Get full text
Journal Article
Web Resource
Human infection with MERS coronavirus after exposure to infected camels, Saudi Arabia, 2013
Memish, Ziad A, Cotten, Matthew, Meyer, Benjamin, Watson, Simon J, Alsahafi, Abdullah J, Al Rabeeah, Abdullah A, Corman, Victor Max, Sieberg, Andrea, Makhdoom, Hatem Q, Assiri, Abdullah, Al Masri, Malaki, Aldabbagh, Souhaib, Bosch, Berend-Jan, Beer, Martin, Müller, Marcel A, Kellam, Paul, Drosten, Christian
Published in Emerging infectious diseases (01.06.2014)
Published in Emerging infectious diseases (01.06.2014)
Get full text
Journal Article
Entamoeba and Giardia parasites implicated as hosts of CRESS viruses
Kinsella, Cormac M., Bart, Aldert, Deijs, Martin, Broekhuizen, Patricia, Kaczorowska, Joanna, Jebbink, Maarten F., van Gool, Tom, Cotten, Matthew, van der Hoek, Lia
Published in Nature communications (15.09.2020)
Published in Nature communications (15.09.2020)
Get full text
Journal Article
Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection
Palser, Anne L, Grayson, Nicholas E, White, Robert E, Corton, Craig, Correia, Samantha, Ba Abdullah, Mohammed M, Watson, Simon J, Cotten, Matthew, Arrand, John R, Murray, Paul G, Allday, Martin J, Rickinson, Alan B, Young, Lawrence S, Farrell, Paul J, Kellam, Paul
Published in Journal of virology (01.05.2015)
Published in Journal of virology (01.05.2015)
Get full text
Journal Article
Field evaluation of the performance of a SARS-CoV-2 antigen rapid diagnostic test in Uganda using nasopharyngeal samples
Nalumansi, Aminah, Lutalo, Tom, Kayiwa, John, Watera, Christine, Balinandi, Stephen, Kiconco, Jocelyn, Nakaseegu, Joweria, Olara, Denis, Odwilo, Emmanuel, Serwanga, Jennifer, Kikaire, Bernard, Ssemwanga, Deogratius, Nabadda, Susan, Ssewanyana, Isaac, Atwine, Diane, Mwebesa, Henry, Bosa, Henry Kyobe, Nsereko, Christopher, Cotten, Matthew, Downing, Robert, Lutwama, Julius, Kaleebu, Pontiano
Published in International journal of infectious diseases (01.03.2021)
Published in International journal of infectious diseases (01.03.2021)
Get full text
Journal Article
SARS-CoV-2 Omicron BA.5 Infections in Vaccinated Persons, Rural Uganda
Mugisha, Joseph, Mpairwe, Bernard, Newton, Robert, Cotten, Matthew, Phan, My V T
Published in Emerging infectious diseases (01.01.2023)
Published in Emerging infectious diseases (01.01.2023)
Get full text
Journal Article
Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013
Watson, Simon J, Langat, Pinky, Reid, Scott M, Lam, Tommy Tsan-Yuk, Cotten, Matthew, Kelly, Michael, Van Reeth, Kristien, Qiu, Yu, Simon, Gaëlle, Bonin, Emilie, Foni, Emanuela, Chiapponi, Chiara, Larsen, Lars, Hjulsager, Charlotte, Markowska-Daniel, Iwona, Urbaniak, Kinga, Dürrwald, Ralf, Schlegel, Michael, Huovilainen, Anita, Davidson, Irit, Dán, Ádám, Loeffen, Willie, Edwards, Stephanie, Bublot, Michel, Vila, Thais, Maldonado, Jaime, Valls, Laura, Brown, Ian H, Pybus, Oliver G, Kellam, Paul
Published in Journal of virology (01.10.2015)
Published in Journal of virology (01.10.2015)
Get full text
Journal Article
Universal Amplification, Next-Generation Sequencing, and Assembly of HIV-1 Genomes
GALL, Astrid, FERNS, Bridget, MORRIS, Clare, WATSON, Simon, COTTEN, Matthew, ROBINSON, Mark, BERRY, Neil, PILLAY, Deenan, KELLAM, Paul
Published in Journal of Clinical Microbiology (01.12.2012)
Published in Journal of Clinical Microbiology (01.12.2012)
Get full text
Journal Article
Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing
Agoti, Charles N, Otieno, James R, Munywoki, Patrick K, Mwihuri, Alexander G, Cane, Patricia A, Nokes, D James, Kellam, Paul, Cotten, Matthew
Published in Journal of virology (01.04.2015)
Published in Journal of virology (01.04.2015)
Get full text
Journal Article
Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus
Cotten, Matthew, Lam, Tommy T, Watson, Simon J, Palser, Anne L, Petrova, Velislava, Grant, Paul, Pybus, Oliver G, Rambaut, Andrew, Guan, Yi, Pillay, Deenan, Kellam, Paul, Nastouli, Eleni
Published in Emerging infectious diseases (01.05.2013)
Published in Emerging infectious diseases (01.05.2013)
Get full text
Journal Article
Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda
Bugembe, Daniel Lule, Kayiwa, John, Phan, My V T, Tushabe, Phiona, Balinandi, Stephen, Dhaala, Beatrice, Lexow, Jonas, Mwebesa, Henry, Aceng, Jane, Kyobe, Henry, Ssemwanga, Deogratius, Lutwama, Julius, Kaleebu, Pontiano, Cotten, Matthew
Published in Emerging infectious diseases (01.10.2020)
Published in Emerging infectious diseases (01.10.2020)
Get full text
Journal Article
Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules
Lamb, Kieran D, Luka, Martha M, Saathoff, Megan, Orton, Richard J, Phan, My V T, Cotten, Matthew, Yuan, Ke, Robertson, David L
Published in PLoS computational biology (25.01.2024)
Published in PLoS computational biology (25.01.2024)
Get full text
Journal Article
Optimisation and Validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda
Oluka, Gerald Kevin, Namubiru, Patricia, Kato, Laban, Ankunda, Violet, Gombe, Ben, Cotten, Matthew, Musenero, Monica, Kaleebu, Pontiano, Fox, Julie, Serwanga, Jennifer
Published in Frontiers in immunology (14.03.2023)
Published in Frontiers in immunology (14.03.2023)
Get full text
Journal Article
Spread, circulation, and evolution of the Middle East respiratory syndrome coronavirus
Cotten, Matthew, Watson, Simon J, Zumla, Alimuddin I, Makhdoom, Hatem Q, Palser, Anne L, Ong, Swee Hoe, Al Rabeeah, Abdullah A, Alhakeem, Rafat F, Assiri, Abdullah, Al-Tawfiq, Jaffar A, Albarrak, Ali, Barry, Mazin, Shibl, Atef, Alrabiah, Fahad A, Hajjar, Sami, Balkhy, Hanan H, Flemban, Hesham, Rambaut, Andrew, Kellam, Paul, Memish, Ziad A
Published in mBio (18.02.2014)
Published in mBio (18.02.2014)
Get full text
Journal Article
Field evaluation of the performance of seven Antigen Rapid diagnostic tests for the diagnosis of SARs-CoV-2 virus infection in Uganda
Bwogi, Josephine, Lutalo, Tom, Tushabe, Phionah, Bukenya, Henry, Eliku, James Peter, Ssewanyana, Isaac, Nabadda, Susan, Nsereko, Christopher, Cotten, Matthew, Downing, Robert, Lutwama, Julius, Kaleebu, Pontiano
Published in PloS one (10.05.2022)
Published in PloS one (10.05.2022)
Get full text
Journal Article
Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm
Cotten, Matthew, Oude Munnink, Bas, Canuti, Marta, Deijs, Martin, Watson, Simon J, Kellam, Paul, van der Hoek, Lia
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
Get full text
Journal Article