Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation
Colman, Rebecca E, Mace, Aurélien, Seifert, Marva, Hetzel, Jonathan, Mshaiel, Haifa, Suresh, Anita, Lemmer, Darrin, Engelthaler, David M, Catanzaro, Donald G, Young, Amanda G, Denkinger, Claudia M, Rodwell, Timothy C
Published in PLoS medicine (30.04.2019)
Published in PLoS medicine (30.04.2019)
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Journal Article
Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing
Colman, Rebecca E, Schupp, James M, Hicks, Nathan D, Smith, David E, Buchhagen, Jordan L, Valafar, Faramarz, Crudu, Valeriu, Romancenco, Elena, Noroc, Ecaterina, Jackson, Lynn, Catanzaro, Donald G, Rodwell, Timothy C, Catanzaro, Antonino, Keim, Paul, Engelthaler, David M
Published in PloS one (13.05.2015)
Published in PloS one (13.05.2015)
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Clinical Evaluation of the XDR-LFC Assay for the Molecular Detection of Isoniazid, Rifampin, Fluoroquinolone, Kanamycin, Capreomycin, and Amikacin Drug Resistance in a Prospective Cohort
Syed, Rehan R, Catanzaro, Donald G, Colman, Rebecca E, Cooney, Christopher G, Linger, Yvonne, Kukhtin, Alexander V, Holmberg, Rebecca C, Norville, Ryan, Crudu, Valeriu, Ciobanu, Nelly, Codreanu, Alexandru, Seifert, Marva, Hillery, Naomi, Chiles, Peter, Catanzaro, Antonino, Rodwell, Timothy C
Published in Journal of clinical microbiology (23.03.2023)
Published in Journal of clinical microbiology (23.03.2023)
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Journal Article
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
Olson, Nathan D, Lund, Steven P, Colman, Rebecca E, Foster, Jeffrey T, Sahl, Jason W, Schupp, James M, Keim, Paul, Morrow, Jayne B, Salit, Marc L, Zook, Justin M
Published in Frontiers in genetics (07.07.2015)
Published in Frontiers in genetics (07.07.2015)
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Journal Article
Age and sex distribution of Mycobacterium tuberculosis infection and rifampicin resistance in Myanmar as detected by Xpert MTB/RIF
Seifert, Marva, Aung, Hlaing Thazin, Besler, Nicole, Harris, Victoria, Mar, Tin Tin, Colman, Rebecca E, Rodwell, Timothy C, Aung, Si Thu
Published in BMC infectious diseases (09.08.2021)
Published in BMC infectious diseases (09.08.2021)
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Journal Article
Barriers to optimal palliative care of lung transplant candidates
Colman, Rebecca E, Curtis, J Randall, Nelson, Judith E, Efferen, Linda, Hadjiliadis, Denis, Levine, Deborah J, Meyer, Keith C, Padilla, Maria, Strek, Mary, Varkey, Basil, Singer, Lianne G
Published in Chest (01.03.2013)
Published in Chest (01.03.2013)
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Journal Article
Designing molecular diagnostics for current tuberculosis drug regimens
Georghiou, Sophia B., de Vos, Margaretha, Velen, Kavindhran, Miotto, Paolo, Colman, Rebecca E., Cirillo, Daniela Maria, Ismail, Nazir, Rodwell, Timothy C., Suresh, Anita, Ruhwald, Morten
Published in Emerging microbes & infections (01.12.2023)
Published in Emerging microbes & infections (01.12.2023)
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Journal Article
The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers
Sahl, Jason W, Vazquez, Adam J, Hall, Carina M, Busch, Joseph D, Tuanyok, Apichai, Mayo, Mark, Schupp, James M, Lummis, Madeline, Pearson, Talima, Shippy, Kenzie, Colman, Rebecca E, Allender, Christopher J, Theobald, Vanessa, Sarovich, Derek S, Price, Erin P, Hutcheson, Alex, Korlach, Jonas, LiPuma, John J, Ladner, Jason, Lovett, Sean, Koroleva, Galina, Palacios, Gustavo, Limmathurotsakul, Direk, Wuthiekanun, Vanaporn, Wongsuwan, Gumphol, Currie, Bart J, Keim, Paul, Wagner, David M
Published in mBio (20.09.2016)
Published in mBio (20.09.2016)
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Journal Article
Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei
Hall, Carina M, Busch, Joseph D, Shippy, Kenzie, Allender, Christopher J, Kaestli, Mirjam, Mayo, Mark, Sahl, Jason W, Schupp, James M, Colman, Rebecca E, Keim, Paul, Currie, Bart J, Wagner, David M
Published in PloS one (23.11.2015)
Published in PloS one (23.11.2015)
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Journal Article
Effect of Repeat Copy Number on Variable-Number Tandem Repeat Mutations in Escherichia coli O157:H7
VOGLER, Amy J, KEYS, Christine, NEMOTO, Yoshimi, COLMAN, Rebecca E, JAY, Zack, KEIM, Paul
Published in Journal of Bacteriology (01.06.2006)
Published in Journal of Bacteriology (01.06.2006)
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Journal Article
Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence
Sahl, Jason W, Allender, Christopher J, Colman, Rebecca E, Califf, Katy J, Schupp, James M, Currie, Bart J, Van Zandt, Kristopher E, Gelhaus, H Carl, Keim, Paul, Tuanyok, Apichai
Published in PloS one (24.03.2015)
Published in PloS one (24.03.2015)
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Journal Article
Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model
Mitchell, Cedar L, Andrianaivoarimanana, Voahangy, Colman, Rebecca E, Busch, Joseph, Hornstra-O'Neill, Heidie, Keim, Paul S, Wagner, David M, Rajerison, Minoarisoa, Birdsell, Dawn N
Published in PLoS neglected tropical diseases (11.12.2017)
Published in PLoS neglected tropical diseases (11.12.2017)
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Journal Article
Detecting rifampin and isoniazid resistance in Mycobacterium tuberculosis direct from patient sputum using an automated integrated system
Colman, Rebecca E., Hagan, Christopher, Chiles, Peter, Seifert, Marva, Catanzaro, Donald G., Kukhtin, Alexander V., Norville, Ryan, Hauns, Laura, Bueno, Arial, Holmberg, Rebecca C., Cooney, Christopher G., Rodwell, Timothy C.
Published in Journal of clinical tuberculosis and other mycobacterial diseases (01.05.2022)
Published in Journal of clinical tuberculosis and other mycobacterial diseases (01.05.2022)
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Journal Article
Comparison of TaqMan PCR Assays for Detection of the Melioidosis Agent Burkholderia pseudomallei in Clinical Specimens
KAESTLI, Mirjam, RICHARDSON, Leisha J, PEARSON, Talima, ENGELTHALER, David M, WAGNER, David M, KEIM, Paul S, SCHUPP, James M, CURRIE, Bart J, COLMAN, Rebecca E, TUANYOK, Apichai, PRICED, Erin P, BOWERS, Jolene R, MAYO, Mark, KELLEY, Erin, SEYMOUR, Meagan L, SAROVICH, Derek S
Published in Journal of Clinical Microbiology (01.06.2012)
Published in Journal of Clinical Microbiology (01.06.2012)
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Journal Article
Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis
Price, Erin P, Hornstra, Heidie M, Limmathurotsakul, Direk, Max, Tamara L, Sarovich, Derek S, Vogler, Amy J, Dale, Julia L, Ginther, Jennifer L, Leadem, Benjamin, Colman, Rebecca E, Foster, Jeffrey T, Tuanyok, Apichai, Wagner, David M, Peacock, Sharon J, Pearson, Talima, Keim, Paul
Published in PLoS pathogens (01.01.2010)
Published in PLoS pathogens (01.01.2010)
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Journal Article
Rapid Detection of Extensively Drug-Resistant Tuberculosis in Clinical Samples Using a Novel Tabletop Platform: Protocol for a Prospective Clinical Study
Hillery, Naomi, Seifert, Marva, Catanzaro, Donald G, McKinnon, Symone, Colman, Rebecca E, Chiles, Peter G, Chesov, Dumitru, Ciobanu, Nelly, Hagan, Christopher, Crudu, Valeriu, Catanzaro, Antonino, Rodwell, Timothy C
Published in JMIR research protocols (14.07.2021)
Published in JMIR research protocols (14.07.2021)
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Journal Article
Application of Targeted Next-Generation Sequencing Assay on a Portable Sequencing Platform for Culture-Free Detection of Drug-Resistant Tuberculosis from Clinical Samples
Cabibbe, Andrea M, Spitaleri, Andrea, Battaglia, Simone, Colman, Rebecca E, Suresh, Anita, Uplekar, Swapna, Rodwell, Timothy C, Cirillo, Daniela M
Published in Journal of clinical microbiology (22.09.2020)
Published in Journal of clinical microbiology (22.09.2020)
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Journal Article
Next-Generation Sequencing-Based User-Friendly Platforms for Drug-Resistant Tuberculosis Diagnosis: A Promise for the Near Future
Dolinger, David L, Colman, Rebecca E, Engelthaler, David M, Rodwell, Timothy C
Published in International journal of mycobacteriology (01.12.2016)
Published in International journal of mycobacteriology (01.12.2016)
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Journal Article
Fine-scale identification of the most likely source of a human plague infection
Colman, Rebecca E, Vogler, Amy J, Lowell, Jennifer L, Gage, Kenneth L, Morway, Christina, Reynolds, Pamela J, Ettestad, Paul, Keim, Paul, Kosoy, Michael Y, Wagner, David M
Published in Emerging infectious diseases (01.10.2009)
Published in Emerging infectious diseases (01.10.2009)
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