The Impact of the Gut Microbiota on Human Health: An Integrative View
Clemente, Jose C., Ursell, Luke K., Parfrey, Laura Wegener, Knight, Rob
Published in Cell (16.03.2012)
Published in Cell (16.03.2012)
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Journal Article
The microbiome in early life: implications for health outcomes
Tamburini, Sabrina, Shen, Nan, Wu, Han Chih, Clemente, Jose C
Published in Nature medicine (01.07.2016)
Published in Nature medicine (01.07.2016)
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Journal Article
UCHIME improves sensitivity and speed of chimera detection
Edgar, Robert C., Haas, Brian J., Clemente, Jose C., Quince, Christopher, Knight, Rob
Published in Bioinformatics (15.08.2011)
Published in Bioinformatics (15.08.2011)
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Journal Article
Early-life gut microbiome composition and milk allergy resolution
Bunyavanich, Supinda, MD, MPH, Shen, Nan, MS, Grishin, Alexander, PhD, Wood, Robert, MD, Burks, Wesley, MD, Dawson, Peter, PhD, Jones, Stacie M., MD, Leung, Donald Y.M., MD, PhD, Sampson, Hugh, MD, Sicherer, Scott, MD, Clemente, Jose C., PhD
Published in Journal of allergy and clinical immunology (01.10.2016)
Published in Journal of allergy and clinical immunology (01.10.2016)
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Journal Article
Interactions Between Diet and the Intestinal Microbiota Alter Intestinal Permeability and Colitis Severity in Mice
Llewellyn, Sean R., Britton, Graham J., Contijoch, Eduardo J., Vennaro, Olivia H., Mortha, Arthur, Colombel, Jean-Frederic, Grinspan, Ari, Clemente, Jose C., Merad, Miriam, Faith, Jeremiah J.
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2018)
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2018)
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Journal Article
The Long-Term Stability of the Human Gut Microbiota
Faith, Jeremiah J., Guruge, Janaki L., Charbonneau, Mark, Subramanian, Sathish, Seedorf, Henning, Goodman, Andrew L., Clemente, Jose C., Knight, Rob, Heath, Andrew C., Leibel, Rudolph L., Rosenbaum, Michael, Gordon, Jeffrey I.
Published in Science (American Association for the Advancement of Science) (05.07.2013)
Published in Science (American Association for the Advancement of Science) (05.07.2013)
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Journal Article
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
Dominguez-Bello, Maria G, De Jesus-Laboy, Kassandra M, Shen, Nan, Cox, Laura M, Amir, Amnon, Gonzalez, Antonio, Bokulich, Nicholas A, Song, Se Jin, Hoashi, Marina, Rivera-Vinas, Juana I, Mendez, Keimari, Knight, Rob, Clemente, Jose C
Published in Nature medicine (01.03.2016)
Published in Nature medicine (01.03.2016)
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Journal Article
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Langille, Morgan G I, Zaneveld, Jesse, Caporaso, J Gregory, McDonald, Daniel, Knights, Dan, Reyes, Joshua A, Clemente, Jose C, Burkepile, Deron E, Vega Thurber, Rebecca L, Knight, Rob, Beiko, Robert G, Huttenhower, Curtis
Published in Nature biotechnology (01.09.2013)
Published in Nature biotechnology (01.09.2013)
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Journal Article
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
Muegge, Brian D., Kuczynski, Justin, Kinghts, Dan, Clemente, Jose C., González, Antonio, Fontana, Luigi, Henrissat, Bernard, Knight, Rob, Gordon, Jeffrey I.
Published in Science (American Association for the Advancement of Science) (20.05.2011)
Published in Science (American Association for the Advancement of Science) (20.05.2011)
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Journal Article
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
Ursell, Luke K., BS, Clemente, Jose C., PhD, Rideout, Jai Ram, Gevers, Dirk, PhD, Caporaso, J. Gregory, PhD, Knight, Rob, PhD
Published in Journal of allergy and clinical immunology (01.05.2012)
Published in Journal of allergy and clinical immunology (01.05.2012)
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Journal Article
Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States
Fierer, Noah, Ladau, Joshua, Clemente, Jose C., Leff, Jonathan W., Owens, Sarah M., Pollard, Katherine S., Knight, Rob, Gilbert, Jack A., McCulley, Rebecca L.
Published in Science (American Association for the Advancement of Science) (01.11.2013)
Published in Science (American Association for the Advancement of Science) (01.11.2013)
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Journal Article
Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus
Dahl, Cecilie, Stanislawski, Maggie, Iszatt, Nina, Mandal, Siddhartha, Lozupone, Catherine, Clemente, Jose C, Knight, Rob, Stigum, Hein, Eggesbø, Merete
Published in PloS one (25.10.2017)
Published in PloS one (25.10.2017)
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Journal Article
Global biogeography of highly diverse protistan communities in soil
Bates, Scott T, Clemente, Jose C, Flores, Gilberto E, Walters, William Anthony, Parfrey, Laura Wegener, Knight, Rob, Fierer, Noah
Published in The ISME Journal (01.03.2013)
Published in The ISME Journal (01.03.2013)
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Journal Article
Detecting and phasing minor single-nucleotide variants from long-read sequencing data
Feng, Zhixing, Clemente, Jose C., Wong, Brandon, Schadt, Eric E.
Published in Nature communications (24.05.2021)
Published in Nature communications (24.05.2021)
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Journal Article
Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities
Kittelmann, Sandra, Seedorf, Henning, Walters, William A, Clemente, Jose C, Knight, Rob, Gordon, Jeffrey I, Janssen, Peter H
Published in PloS one (08.02.2013)
Published in PloS one (08.02.2013)
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Journal Article
Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
Ridaura, Vanessa K., Faith, Jeremiah J., Rey, Federico E., Cheng, Jiye, Duncan, Alexis E., Kau, Andrew L., Griffin, Nicholas W., Lombard, Vincent, Henrissat, Bernard, Bain, James R., Muehlbauer, Michael J., Ilkayeva, Olga, Semenkovich, Clay F., Funai, Katsuhiko, Hayashi, David K., Lyle, Barbara J., Martini, Margaret C., Ursell, Luke K., Clemente, Jose C., Van Treuren, William, Walters, William A., Knight, Rob, Newgard, Christopher B., Heath, Andrew C., Gordon, Jeffrey I.
Published in Science (American Association for the Advancement of Science) (06.09.2013)
Published in Science (American Association for the Advancement of Science) (06.09.2013)
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Journal Article
Subsistence strategies in traditional societies distinguish gut microbiomes
Obregon-Tito, Alexandra J., Tito, Raul Y., Metcalf, Jessica, Sankaranarayanan, Krithivasan, Clemente, Jose C., Ursell, Luke K., Zech Xu, Zhenjiang, Van Treuren, Will, Knight, Rob, Gaffney, Patrick M., Spicer, Paul, Lawson, Paul, Marin-Reyes, Luis, Trujillo-Villarroel, Omar, Foster, Morris, Guija-Poma, Emilio, Troncoso-Corzo, Luzmila, Warinner, Christina, Ozga, Andrew T., Lewis, Cecil M.
Published in Nature communications (25.03.2015)
Published in Nature communications (25.03.2015)
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Journal Article
Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice
Carvalho, Frederic A., Koren, Omry, Goodrich, Julia K., Johansson, Malin E.V., Nalbantoglu, Ilke, Aitken, Jesse D., Su, Yueju, Chassaing, Benoit, Walters, William A., González, Antonio, Clemente, Jose C., Cullender, Tyler C., Barnich, Nicolas, Darfeuille-Michaud, Arlette, Vijay-Kumar, Matam, Knight, Rob, Ley, Ruth E., Gewirtz, Andrew T.
Published in Cell host & microbe (16.08.2012)
Published in Cell host & microbe (16.08.2012)
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Journal Article
Cohabiting family members share microbiota with one another and with their dogs
Song, Se Jin, Lauber, Christian, Costello, Elizabeth K, Lozupone, Catherine A, Humphrey, Gregory, Berg-Lyons, Donna, Caporaso, J Gregory, Knights, Dan, Clemente, Jose C, Nakielny, Sara, Gordon, Jeffrey I, Fierer, Noah, Knight, Rob
Published in eLife (16.04.2013)
Published in eLife (16.04.2013)
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Journal Article