Convergent regulatory evolution and loss of flight in paleognathous birds
Sackton, Timothy B, Grayson, Phil, Cloutier, Alison, Hu, Zhirui, Liu, Jun S, Wheeler, Nicole E, Gardner, Paul P, Clarke, Julia A, Baker, Allan J, Clamp, Michele, Edwards, Scott V
Published in Science (American Association for the Advancement of Science) (05.04.2019)
Published in Science (American Association for the Advancement of Science) (05.04.2019)
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Journal Article
Identifying novel constrained elements by exploiting biased substitution patterns
Garber, Manuel, Guttman, Mitchell, Clamp, Michele, Zody, Michael C., Friedman, Nir, Xie, Xiaohui
Published in Bioinformatics (15.06.2009)
Published in Bioinformatics (15.06.2009)
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Journal Article
Distinguishing protein-coding and noncoding genes in the human genome
Clamp, Michele, Fry, Ben, Kamal, Mike, Xie, Xiaohui, Cuff, James, Lin, Michael F, Kellis, Manolis, Lindblad-Toh, Kerstin, Lander, Eric S
Published in Proceedings of the National Academy of Sciences - PNAS (04.12.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (04.12.2007)
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Journal Article
The Jalview Java alignment editor
Clamp, Michele, Cuff, James, Searle, Stephen M., Barton, Geoffrey J.
Published in Bioinformatics (12.02.2004)
Published in Bioinformatics (12.02.2004)
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Journal Article
Initial sequence and comparative analysis of the cat genome
Pontius, Joan U, Mullikin, James C, Smith, Douglas R, Lindblad-Toh, Kerstin, Gnerre, Sante, Clamp, Michele, Chang, Jean, Stephens, Robert, Neelam, Beena, Volfovsky, Natalia, Schäffer, Alejandro A, Agarwala, Richa, Narfström, Kristina, Murphy, William J, Giger, Urs, Roca, Alfred L, Antunes, Agostinho, Menotti-Raymond, Marilyn, Yuhki, Naoya, Pecon-Slattery, Jill, Johnson, Warren E, Bourque, Guillaume, Tesler, Glenn, O'Brien, Stephen J
Published in Genome Research (01.11.2007)
Published in Genome Research (01.11.2007)
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Journal Article
The Ensembl automatic gene annotation system
Curwen, Val, Eyras, Eduardo, Andrews, T Daniel, Clarke, Laura, Mongin, Emmanuel, Searle, Steven M J, Clamp, Michele
Published in Genome research (01.05.2004)
Published in Genome research (01.05.2004)
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Journal Article
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
Waterhouse, Andrew M., Procter, James B., Martin, David M. A., Clamp, Michèle, Barton, Geoffrey J.
Published in Bioinformatics (01.05.2009)
Published in Bioinformatics (01.05.2009)
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Journal Article
ESTGenes: alternative splicing from ESTs in Ensembl
Eyras, Eduardo, Caccamo, Mario, Curwen, Val, Clamp, Michele
Published in Genome research (01.05.2004)
Published in Genome research (01.05.2004)
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Journal Article
The Ensembl analysis pipeline
Potter, Simon C, Clarke, Laura, Curwen, Val, Keenan, Stephen, Mongin, Emmanuel, Searle, Stephen M J, Stabenau, Arne, Storey, Roy, Clamp, Michele
Published in Genome research (01.05.2004)
Published in Genome research (01.05.2004)
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Journal Article
An Initial Strategy for the Systematic Identification of Functional Elements in the Human Genome by Low-Redundancy Comparative Sequencing
Margulies, Elliott H., Vinson, Jade P., NISC Comparative Sequencing Program, Miller, Webb, Jaffe, David B., Lindblad-Toh, Kerstin, Chang, Jean L., Green, Eric D., Lander, Eric S., Mullikin, James C., Clamp, Michele
Published in Proceedings of the National Academy of Sciences - PNAS (29.03.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (29.03.2005)
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Journal Article
Metatranscriptomics profile of the gill microbial community during Bathymodiolus azoricus aquarium acclimatization at atmospheric pressure
Barros, Inês, Froufe, Hugo, Marnellos, George, Egas, Conceição, Delaney, Jennifer, Clamp, Michele, Santos, Ricardo Serrão, Bettencourt, Raul
Published in AIMS microbiology (01.01.2018)
Published in AIMS microbiology (01.01.2018)
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Journal Article
Biopipe: a flexible framework for protocol-based bioinformatics analysis
Hoon, Shawn, Ratnapu, Kiran Kumar, Chia, Jer-Ming, Kumarasamy, Balamurugan, Juguang, Xiao, Clamp, Michele, Stabenau, Arne, Potter, Simon, Clarke, Laura, Stupka, Elia
Published in Genome research (01.08.2003)
Published in Genome research (01.08.2003)
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Journal Article
Mining the draft human genome
Birney, Ewan, Bateman, Alex, Clamp, Michele E, Hubbard, Tim J
Published in Nature (London) (15.02.2001)
Published in Nature (London) (15.02.2001)
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Journal Article
Error, noise and bias in de novo transcriptome assemblies
Freedman, Adam H., Clamp, Michele, Sackton, Timothy B.
Published in Molecular ecology resources (01.01.2021)
Published in Molecular ecology resources (01.01.2021)
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Journal Article
Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone
Cloutier, Alison, Sackton, Timothy B., Grayson, Phil, Clamp, Michele, Baker, Allan J., Edwards, Scott V.
Published in Systematic biology (01.11.2019)
Published in Systematic biology (01.11.2019)
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Journal Article
The Ensembl Core Software Libraries: Figure 1
Stabenau, Arne, McVicker, Graham, Melsopp, Craig, Proctor, Glenn, Clamp, Michele, Birney, Ewan
Published in Genome research (01.05.2004)
Published in Genome research (01.05.2004)
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Journal Article
A high-resolution map of human evolutionary constraint using 29 mammals
KERSTIN, Lindblad- Toh, GARBER, Manuel, WARD, Lucas D, LOWE, Craig B, HOLLOWAY, Alisha K, CLAMP, Michele, GNERRE, Sante, ALFÖLDI, Jessica, BEAL, Kathryn, JEAN CHANG, CLAWSON, Hiram, CUFF, James, ZUK, Or, PALMA, Federica Di, FITZGERALD, Stephen, FLICEK, Paul, GUTTMAN, Mitchell, HUBISZ, Melissa J, JAFFE, David B, JUNGREIS, Irwin, JAMES KENT, W, KOSTKA, Dennis, LARA, Marcia, LIN, Michael F, MARTINS, Andre L, MASSINGHAM, Tim, MOLTKE, Ida, RANEY, Brian J, RASMUSSEN, Matthew D, ROBINSON, Jim, STARK, Alexander, VILELLA, Albert J, JIAYU WEN, XIAOHUI XIE, PARKER, Brian J, ZODY, Michael C, WORLEY, Kim C, KOVAR, Christie L, MUZNY, Donna M, GIBBS, Richard A, WARREN, Wesley C, MARDIS, Elaine R, WEINSTOCK, George M, WILSON, Richard K, BIRNEY, Ewan, WASHIETL, Stefan, MARGULIES, Elliott H, HERRERO, Javier, GREEN, Eric D, HAUSSLER, David, SIEPEL, Adam, GOLDMAN, Nick, POLLARD, Katherine S, PEDERSEN, Jakob S, LANDER, Eric S, KELLIS, Manolis, KHERADPOUR, Pouya, ERNST, Jason, JORDAN, Gregory, MAUCELI, Evan
Published in Nature (London) (12.10.2011)
Published in Nature (London) (12.10.2011)
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Journal Article
Three Periods of Regulatory Innovation During Vertebrate Evolution
Lowe, Craig B., Kellis, Manolis, Siepel, Adam, Raney, Brian J., Clamp, Michele, Salama, Sofie R., Kingsley, David M., Lindblad-Toh, Kerstin, Haussler, David
Published in Science (American Association for the Advancement of Science) (19.08.2011)
Published in Science (American Association for the Advancement of Science) (19.08.2011)
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Journal Article
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
MIKKELSEN, Tarjei S, WAKEFIELD, Matthew J, JURKA, Jerzy, KAMAL, Michael, MAUCELI, Evan, SEARLE, Stephen M. J, SHARPE, Ted, BAKER, Michelle L, BATZER, Mark A, BENOS, Panayiotis V, BELOV, Katherine, CLAMP, Michele, AKEN, Bronwen, C, April, CUFF, James, DAS, Radhika, DAVIDOW, Lance, DEAKIN, Janine E, FAZZARI, Melissa J, GLASS, Jacob L, GRABHERR, Manfred, GREALLY, John M, WANJUN GU, AMEMIYA, Chris T, HORE, Timothy A, HUTTLEY, Gavin A, KLEBER, Michael, JIRTLE, Randy L, KOINA, Edda, LEE, Jeannie T, MAHONY, Shaun, MARRA, Marco A, MILLER, Robert D, NICHOLLS, Robert D, CHANG, Jean L, ODA, Mayumi, PAPENFUSS, Anthony T, PARRA, Zuly E, POLLOCK, David D, RAY, David A, SCHEIN, Jacqueline E, SPEED, Terence P, THOMPSON, Katherine, VANDEBERG, John L, WADE, Claire M, DUKE, Shannon, GARBER, Manuel, GENTLES, Andrew J, GOODSTADT, Leo, HEGER, Andreas
Published in Nature (10.05.2007)
Published in Nature (10.05.2007)
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Journal Article