Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications
Bäckhed, Fredrik, Fraser, Claire M., Ringel, Yehuda, Sanders, Mary Ellen, Sartor, R. Balfour, Sherman, Philip M., Versalovic, James, Young, Vincent, Finlay, B. Brett
Published in Cell host & microbe (15.11.2012)
Published in Cell host & microbe (15.11.2012)
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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease
Erickson, Alison R, Cantarel, Brandi L, Lamendella, Regina, Darzi, Youssef, Mongodin, Emmanuel F, Pan, Chongle, Shah, Manesh, Halfvarson, Jonas, Tysk, Curt, Henrissat, Bernard, Raes, Jeroen, Verberkmoes, Nathan C, Fraser, Claire M, Hettich, Robert L, Jansson, Janet K
Published in PloS one (28.11.2012)
Published in PloS one (28.11.2012)
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Gut Microbiota in Multiple Sclerosis: Possible Influence of Immunomodulators
Cantarel, Brandi L., Waubant, Emmanuelle, Chehoud, Christel, Kuczynski, Justin, DeSantis, Todd Z., Warrington, Janet, Venkatesan, Arun, Fraser, Claire M., Mowry, Ellen M.
Published in Journal of investigative medicine (01.06.2015)
Published in Journal of investigative medicine (01.06.2015)
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An integrated genomic and transcriptomic survey of mucormycosis-causing fungi
Chibucos, Marcus C., Soliman, Sameh, Gebremariam, Teclegiorgis, Lee, Hongkyu, Daugherty, Sean, Orvis, Joshua, Shetty, Amol C., Crabtree, Jonathan, Hazen, Tracy H., Etienne, Kizee A., Kumari, Priti, O’Connor, Timothy D., Rasko, David A., Filler, Scott G., Fraser, Claire M., Lockhart, Shawn R., Skory, Christopher D., Ibrahim, Ashraf S., Bruno, Vincent M.
Published in Nature communications (22.07.2016)
Published in Nature communications (22.07.2016)
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Primordial origin and diversification of plasmids in Lyme disease agent bacteria
Casjens, Sherwood R, Di, Lia, Akther, Saymon, Mongodin, Emmanuel F, Luft, Benjamin J, Schutzer, Steven E, Fraser, Claire M, Qiu, Wei-Gang
Published in BMC genomics (27.03.2018)
Published in BMC genomics (27.03.2018)
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Functional dynamics of the gut microbiome in elderly people during probiotic consumption
Eloe-Fadrosh, Emiley A, Brady, Arthur, Crabtree, Jonathan, Drabek, Elliott F, Ma, Bing, Mahurkar, Anup, Ravel, Jacques, Haverkamp, Miriam, Fiorino, Anne-Maria, Botelho, Christine, Andreyeva, Irina, Hibberd, Patricia L, Fraser, Claire M
Published in mBio (14.04.2015)
Published in mBio (14.04.2015)
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Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli
Hazen, Tracy H., Sahl, Jason W., Fraser, Claire M., Donnenberg, Michael S., Scheutz, Flemming, Rasko, David A.
Published in Proceedings of the National Academy of Sciences - PNAS (30.07.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (30.07.2013)
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Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome
Zupancic, Margaret L, Cantarel, Brandi L, Liu, Zhenqiu, Drabek, Elliott F, Ryan, Kathleen A, Cirimotich, Shana, Jones, Cheron, Knight, Rob, Walters, William A, Knights, Daniel, Mongodin, Emmanuel F, Horenstein, Richard B, Mitchell, Braxton D, Steinle, Nanette, Snitker, Soren, Shuldiner, Alan R, Fraser, Claire M
Published in PloS one (15.08.2012)
Published in PloS one (15.08.2012)
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Genomic Confirmation of Borrelia garinii, United States
Rudenko, Natalie, Golovchenko, Maryna, Horak, Ales, Grubhoffer, Libor, Mongodin, Emmanuel F, Fraser, Claire M, Qiu, Weigang, Luft, Benjamin J, Morgan, Richard G, Casjens, Sherwood R, Schutzer, Steven E
Published in Emerging infectious diseases (01.01.2023)
Published in Emerging infectious diseases (01.01.2023)
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New signaling pathways govern the host response to C. albicans infection in various niches
Liu, Yaoping, Shetty, Amol C, Schwartz, Jennifer A, Bradford, L Latey, Xu, Wenjie, Phan, Qyunh T, Kumari, Priti, Mahurkar, Anup, Mitchell, Aaron P, Ravel, Jacques, Fraser, Claire M, Filler, Scott G, Bruno, Vincent M
Published in Genome research (01.05.2015)
Published in Genome research (01.05.2015)
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Simultaneous transcriptional profiling of bacteria and their host cells
Humphrys, Michael S, Creasy, Todd, Sun, Yezhou, Shetty, Amol C, Chibucos, Marcus C, Drabek, Elliott F, Fraser, Claire M, Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patrik M, Mahurkar, Anup, Myers, Garry S A
Published in PloS one (04.12.2013)
Published in PloS one (04.12.2013)
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Microbial transformation from normal oral microbiota to acute endodontic infections
Hsiao, William Wl, Li, Kevin L, Liu, Zhenqiu, Jones, Cheron, Fraser-Liggett, Claire M, Fouad, Ashraf F
Published in BMC genomics (28.07.2012)
Published in BMC genomics (28.07.2012)
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Transcriptional attenuation controls macrolide inducible efflux and resistance in Streptococcus pneumoniae and in other Gram-positive bacteria containing mef/mel(msr(D)) elements
Chancey, Scott T, Bai, Xianhe, Kumar, Nikhil, Drabek, Elliott F, Daugherty, Sean C, Colon, Thomas, Ott, Sandra, Sengamalay, Naomi, Sadzewicz, Lisa, Tallon, Luke J, Fraser, Claire M, Tettelin, Hervé, Stephens, David S
Published in PloS one (19.02.2015)
Published in PloS one (19.02.2015)
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Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses
Eloe-Fadrosh, Emiley A, McArthur, Monica A, Seekatz, Anna M, Drabek, Elliott F, Rasko, David A, Sztein, Marcelo B, Fraser, Claire M
Published in PloS one (24.04.2013)
Published in PloS one (24.04.2013)
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Bifidobacterium animalis subsp. lactis BB-12 Protects against Antibiotic-Induced Functional and Compositional Changes in Human Fecal Microbiome
Merenstein, Daniel, Fraser, Claire M., Roberts, Robert F., Liu, Tian, Grant-Beurmann, Silvia, Tan, Tina P., Smith, Keisha Herbin, Cronin, Tom, Martin, Olivia A., Sanders, Mary Ellen, Lucan, Sean C., Kane, Maureen A.
Published in Nutrients (17.08.2021)
Published in Nutrients (17.08.2021)
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Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn's remission patients despite temporal variations in microbial taxa, genomes, and proteomes
Blakeley-Ruiz, J Alfredo, Erickson, Alison R, Cantarel, Brandi L, Xiong, Weili, Adams, Rachel, Jansson, Janet K, Fraser, Claire M, Hettich, Robert L
Published in Microbiome (11.02.2019)
Published in Microbiome (11.02.2019)
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High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks
Tettelin, Hervé, Davidson, Rebecca M, Agrawal, Sonia, Aitken, Moira L, Shallom, Shamira, Hasan, Nabeeh A, Strong, Michael, de Moura, Vinicius Calado Nogueira, De Groote, Mary Ann, Duarte, Rafael S, Hine, Erin, Parankush, Sushma, Su, Qi, Daugherty, Sean C, Fraser, Claire M, Brown-Elliott, Barbara A, Wallace, Jr, Richard J, Holland, Steven M, Sampaio, Elizabeth P, Olivier, Kenneth N, Jackson, Mary, Zelazny, Adrian M
Published in Emerging infectious diseases (01.03.2014)
Published in Emerging infectious diseases (01.03.2014)
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Dynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal HIV infection and breastfeeding
Grant-Beurmann, Silvia, Jumare, Jibreel, Ndembi, Nicaise, Matthew, Olayemi, Shutt, Ashley, Omoigberale, Augustine, Martin, Olivia A, Fraser, Claire M, Charurat, Man
Published in Microbiome (12.04.2022)
Published in Microbiome (12.04.2022)
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Intratumor genetic heterogeneity in squamous cell carcinoma of the oral cavity
Zandberg, Dan P., Tallon, Luke J., Nagaraj, Sushma, Sadzewicz, Lisa K., Zhang, Yuji, Strome, Maxwell B., Zhao, Xuechu E., Vavikolanu, Kranthi, Zhang, Xiaoyu, Papadimitriou, John C., Hubbard, Fleesie A., Bentzen, Søren M., Strome, Scott E., Fraser, Claire M.
Published in Head & neck (01.08.2019)
Published in Head & neck (01.08.2019)
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