DNA methylation arrays as surrogate measures of cell mixture distribution
Houseman, Eugene Andres, Accomando, William P, Koestler, Devin C, Christensen, Brock C, Marsit, Carmen J, Nelson, Heather H, Wiencke, John K, Kelsey, Karl T
Published in BMC bioinformatics (08.05.2012)
Published in BMC bioinformatics (08.05.2012)
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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray
Salas, Lucas A, Koestler, Devin C, Butler, Rondi A, Hansen, Helen M, Wiencke, John K, Kelsey, Karl T, Christensen, Brock C
Published in Genome Biology (29.05.2018)
Published in Genome Biology (29.05.2018)
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Journal Article
DNA methylation aging clocks: challenges and recommendations
Bell, Christopher G, Lowe, Robert, Adams, Peter D, Baccarelli, Andrea A, Beck, Stephan, Bell, Jordana T, Christensen, Brock C, Gladyshev, Vadim N, Heijmans, Bastiaan T, Horvath, Steve, Ideker, Trey, Issa, Jean-Pierre J, Kelsey, Karl T, Marioni, Riccardo E, Reik, Wolf, Relton, Caroline L, Schalkwyk, Leonard C, Teschendorff, Andrew E, Wagner, Wolfgang, Zhang, Kang, Rakyan, Vardhman K
Published in Genome Biology (25.11.2019)
Published in Genome Biology (25.11.2019)
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Journal Article
Cell-type deconvolution from DNA methylation: a review of recent applications
Titus, Alexander J, Gallimore, Rachel M, Salas, Lucas A, Christensen, Brock C
Published in Human molecular genetics (01.10.2017)
Published in Human molecular genetics (01.10.2017)
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Journal Article
Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling
Salas, Lucas A., Zhang, Ze, Koestler, Devin C., Butler, Rondi A., Hansen, Helen M., Molinaro, Annette M., Wiencke, John K., Kelsey, Karl T., Christensen, Brock C.
Published in Nature communications (09.02.2022)
Published in Nature communications (09.02.2022)
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Journal Article
Widespread redundancy in -omics profiles of cancer mutation states
Crawford, Jake, Christensen, Brock C, Chikina, Maria, Greene, Casey S
Published in Genome Biology (27.06.2022)
Published in Genome Biology (27.06.2022)
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Journal Article
Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner
Lundgren, Sara N, Madan, Juliette C, Emond, Jennifer A, Morrison, Hilary G, Christensen, Brock C, Karagas, Margaret R, Hoen, Anne G
Published in Microbiome (05.07.2018)
Published in Microbiome (05.07.2018)
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Journal Article
5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients
Johnson, Kevin C., Houseman, E. Andres, King, Jessica E., von Herrmann, Katharine M., Fadul, Camilo E., Christensen, Brock C.
Published in Nature communications (25.11.2016)
Published in Nature communications (25.11.2016)
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Journal Article
MicroRNA Expression Ratio Is Predictive of Head and Neck Squamous Cell Carcinoma
AVISSAR, Michele, CHRISTENSEN, Brock C, KELSEY, Karl T, MARSIT, Carmen J
Published in Clinical cancer research (15.04.2009)
Published in Clinical cancer research (15.04.2009)
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Journal Article
Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context
Christensen, Brock C, Houseman, E Andres, Marsit, Carmen J, Zheng, Shichun, Wrensch, Margaret R, Wiemels, Joseph L, Nelson, Heather H, Karagas, Margaret R, Padbury, James F, Bueno, Raphael, Sugarbaker, David J, Yeh, Ru-Fang, Wiencke, John K, Kelsey, Karl T
Published in PLoS genetics (01.08.2009)
Published in PLoS genetics (01.08.2009)
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Journal Article
Detailed immune profiling in pediatric Crohn's disease using methylation cytometry
Reynolds, Samuel R, Salas, Lucas A, Chen, Ji-Qing, Christensen, Brock C
Published in Epigenetics (01.12.2024)
Published in Epigenetics (01.12.2024)
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Journal Article
Seroepidemiology of Human Polyomaviruses in a US Population
Gossai, Anala, Waterboer, Tim, Nelson, Heather H, Michel, Angelika, Willhauck-Fleckenstein, Martina, Farzan, Shohreh F, Hoen, Anne G, Christensen, Brock C, Kelsey, Karl T, Marsit, Carmen J, Pawlita, Michael, Karagas, Margaret R
Published in American journal of epidemiology (01.01.2016)
Published in American journal of epidemiology (01.01.2016)
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Journal Article
Identifying tumor type and cell type-specific gene expression alterations in pediatric central nervous system tumors
Lee, Min Kyung, Azizgolshani, Nasim, Shapiro, Joshua A., Nguyen, Lananh N., Kolling, Fred W., Zanazzi, George J., Frost, Hildreth Robert, Christensen, Brock C.
Published in Nature communications (30.04.2024)
Published in Nature communications (30.04.2024)
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Journal Article
Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors
Lee, Min Kyung, Azizgolshani, Nasim, Zhang, Ze, Perreard, Laurent, Kolling, Fred W., Nguyen, Lananh N., Zanazzi, George J., Salas, Lucas A., Christensen, Brock C.
Published in Nature communications (30.04.2024)
Published in Nature communications (30.04.2024)
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Journal Article
Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer
Brown, Meredith S, Abdollahi, Behnaz, Wilkins, Owen M, Lu, Hanxu, Chakraborty, Priyanka, Ognjenovic, Nevena B, Muller, Kristen E, Jolly, Mohit Kumar, Christensen, Brock C, Hassanpour, Saeed, Pattabiraman, Diwakar R
Published in Science advances (05.08.2022)
Published in Science advances (05.08.2022)
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Journal Article
Lineage plasticity enables low-ER luminal tumors to evolve and gain basal-like traits
Mohamed, Gadisti Aisha, Mahmood, Sundis, Ognjenovic, Nevena B, Lee, Min Kyung, Wilkins, Owen M, Christensen, Brock C, Muller, Kristen E, Pattabiraman, Diwakar R
Published in Breast cancer research : BCR (01.03.2023)
Published in Breast cancer research : BCR (01.03.2023)
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Journal Article
HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data
Zhang, Ze, Wiencke, John K, Kelsey, Karl T, Koestler, Devin C, Christensen, Brock C, Salas, Lucas A
Published in Journal of translational medicine (08.11.2022)
Published in Journal of translational medicine (08.11.2022)
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Journal Article
Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data
Gervin, Kristina, Salas, Lucas A, Bakulski, Kelly M, van Zelm, Menno C, Koestler, Devin C, Wiencke, John K, Duijts, Liesbeth, Moll, Henriëtte A, Kelsey, Karl T, Kobor, Michael S, Lyle, Robert, Christensen, Brock C, Felix, Janine F, Jones, Meaghan J
Published in Clinical epigenetics (27.08.2019)
Published in Clinical epigenetics (27.08.2019)
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