Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model
Mohammad Mirzaei, Navid, Changizi, Navid, Asadpoure, Alireza, Su, Sumeyye, Sofia, Dilruba, Tatarova, Zuzana, Zervantonakis, Ioannis K, Chang, Young Hwan, Shahriyari, Leili
Published in PLoS computational biology (16.03.2022)
Published in PLoS computational biology (16.03.2022)
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Journal Article
Toward Minimal Residual Disease-Directed Therapy in Melanoma
Rambow, Florian, Rogiers, Aljosja, Marin-Bejar, Oskar, Aibar, Sara, Femel, Julia, Dewaele, Michael, Karras, Panagiotis, Brown, Daniel, Chang, Young Hwan, Debiec-Rychter, Maria, Adriaens, Carmen, Radaelli, Enrico, Wolter, Pascal, Bechter, Oliver, Dummer, Reinhard, Levesque, Mitchell, Piris, Adriano, Frederick, Dennie T., Boland, Genevieve, Flaherty, Keith T., van den Oord, Joost, Voet, Thierry, Aerts, Stein, Lund, Amanda W., Marine, Jean-Christophe
Published in Cell (09.08.2018)
Published in Cell (09.08.2018)
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Quantitative Multiplex Immunohistochemistry Reveals Myeloid-Inflamed Tumor-Immune Complexity Associated with Poor Prognosis
Tsujikawa, Takahiro, Kumar, Sushil, Borkar, Rohan N., Azimi, Vahid, Thibault, Guillaume, Chang, Young Hwan, Balter, Ariel, Kawashima, Rie, Choe, Gina, Sauer, David, El Rassi, Edward, Clayburgh, Daniel R., Kulesz-Martin, Molly F., Lutz, Eric R., Zheng, Lei, Jaffee, Elizabeth M., Leyshock, Patrick, Margolin, Adam A., Mori, Motomi, Gray, Joe W., Flint, Paul W., Coussens, Lisa M.
Published in Cell reports (Cambridge) (04.04.2017)
Published in Cell reports (Cambridge) (04.04.2017)
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Journal Article
Ultra high content analyses of circulating and tumor associated hybrid cells reveal phenotypic heterogeneity
Whalen, Riley M., Anderson, Ashley N., Jones, Jocelyn A., Sims, Zachary, Chang, Young Hwan, Nederlof, Michel A., Wong, Melissa H., Gibbs, Summer L.
Published in Scientific reports (28.03.2024)
Published in Scientific reports (28.03.2024)
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Journal Article
VIPER is a genetically encoded peptide tag for fluorescence and electron microscopy
Doh, Julia K., White, Jonathan D., Zane, Hannah K., Chang, Young Hwan, López, Claudia S., Enns, Caroline A., Beatty, Kimberly E.
Published in Proceedings of the National Academy of Sciences - PNAS (18.12.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (18.12.2018)
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Journal Article
Genomic Alterations during the In Situ to Invasive Ductal Breast Carcinoma Transition Shaped by the Immune System
Trinh, Anne, Gil Del Alcazar, Carlos R, Shukla, Sachet A, Chin, Koei, Chang, Young Hwan, Thibault, Guillaume, Eng, Jennifer, Jovanović, Bojana, Aldaz, C Marcelo, Park, So Yeon, Jeong, Joon, Wu, Catherine, Gray, Joe, Polyak, Kornelia
Published in Molecular cancer research (01.04.2021)
Published in Molecular cancer research (01.04.2021)
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Exploratory Analyses of Circulating Neoplastic-Immune Hybrid Cells as Prognostic Biomarkers in Advanced Intrahepatic Cholangiocarcinoma
Patel, Ranish K, Parappilly, Michael S, Walker, Brett S, Heussner, Robert T, Fung, Alice, Chang, Young Hwan, Kardosh, Adel, Lopez, Charles D, Mayo, Skye C, Wong, Melissa H
Published in International journal of molecular sciences (01.09.2024)
Published in International journal of molecular sciences (01.09.2024)
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Journal Article
Relevance of circulating hybrid cells as a non-invasive biomarker for myriad solid tumors
Dietz, Matthew S., Sutton, Thomas L., Walker, Brett S., Gast, Charles E., Zarour, Luai, Sengupta, Sidharth K., Swain, John R., Eng, Jennifer, Parappilly, Michael, Limbach, Kristen, Sattler, Ariana, Burlingame, Erik, Chin, Yuki, Gower, Austin, Mira, Jose L. Montoya, Sapre, Ajay, Chiu, Yu-Jui, Clayburgh, Daniel R., Pommier, SuEllen J., Cetnar, Jeremy P., Fischer, Jared M., Jaboin, Jerry J., Pommier, Rodney F., Sheppard, Brett C., Tsikitis, V. Liana, Skalet, Alison H., Mayo, Skye C., Lopez, Charles D., Gray, Joe W., Mills, Gordon B., Mitri, Zahi, Chang, Young Hwan, Chin, Koei, Wong, Melissa H.
Published in Scientific reports (01.07.2021)
Published in Scientific reports (01.07.2021)
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Journal Article
A multi-encoder variational autoencoder controls multiple transformational features in single-cell image analysis
Ternes, Luke, Dane, Mark, Gross, Sean, Labrie, Marilyne, Mills, Gordon, Gray, Joe, Heiser, Laura, Chang, Young Hwan
Published in Communications biology (23.03.2022)
Published in Communications biology (23.03.2022)
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Journal Article
Computational measurement of tumor immune microenvironment in gastric adenocarcinomas
Chang, Young Hwan, Heo, You Jeong, Cho, Junhun, Song, Sang Yong, Lee, Jeeyun, Kim, Kyoung-Mee
Published in Scientific reports (17.09.2018)
Published in Scientific reports (17.09.2018)
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Journal Article
Deciphering the Immune Complexity in Esophageal Adenocarcinoma and Pre-Cancerous Lesions With Sequential Multiplex Immunohistochemistry and Sparse Subspace Clustering Approach
Sundaram, Srinand, Kim, Eun Na, Jones, Georgina M, Sivagnanam, Shamilene, Tripathi, Monika, Miremadi, Ahmad, Di Pietro, Massimiliano, Coussens, Lisa M, Fitzgerald, Rebecca C, Chang, Young Hwan, Zhuang, Lizhe
Published in Frontiers in immunology (19.05.2022)
Published in Frontiers in immunology (19.05.2022)
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Journal Article
MYC Deregulation and PTEN Loss Model Tumor and Stromal Heterogeneity of Aggressive Triple-Negative Breast Cancer
Doha, Zinab O., Wang, Xiaoyan, Calistri, Nicholas L., Eng, Jennifer, Daniel, Colin J., Ternes, Luke, Kim, Eun Na, Pelz, Carl, Munks, Michael, Betts, Courtney, Kwon, Sunjong, Bucher, Elmar, Li, Xi, Waugh, Trent, Tatarova, Zuzana, Blumberg, Dylan, Ko, Aaron, Kirchberger, Nell, Pietenpol, Jennifer A., Sanders, Melinda E., Langer, Ellen M., Dai, Mu-Shui, Mills, Gordon, Chin, Koei, Chang, Young Hwan, Coussens, Lisa M., Gray, Joe W., Heiser, Laura M., Sears, Rosalie C.
Published in Nature communications (13.09.2023)
Published in Nature communications (13.09.2023)
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Journal Article
Spatial Profiles of Intratumoral PD-1 + Helper T Cells Predict Prognosis in Head and Neck Squamous Cell Carcinoma
Yoshimura, Kanako, Tsujikawa, Takahiro, Mitsuda, Junichi, Ogi, Hiroshi, Saburi, Sumiyo, Ohmura, Gaku, Arai, Akihito, Shibata, Saya, Thibault, Guillaume, Chang, Young Hwan, Clayburgh, Daniel R, Yasukawa, Satoru, Miyagawa-Hayashino, Aya, Konishi, Eiichi, Itoh, Kyoko, Coussens, Lisa M, Hirano, Shigeru
Published in Frontiers in immunology (28.10.2021)
Published in Frontiers in immunology (28.10.2021)
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Journal Article
Robust Cell Detection and Segmentation for Image Cytometry Reveal Th17 Cell Heterogeneity
Tsujikawa, Takahiro, Thibault, Guillaume, Azimi, Vahid, Sivagnanam, Sam, Banik, Grace, Means, Casey, Kawashima, Rie, Clayburgh, Daniel R., Gray, Joe W., Coussens, Lisa M., Chang, Young Hwan
Published in Cytometry. Part A (01.04.2019)
Published in Cytometry. Part A (01.04.2019)
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Journal Article
Signal removal methods for highly multiplexed immunofluorescent staining using antibody conjugated oligonucleotides
McMahon, Nathan, Jones, Jocelyn, Eng, Jennifer, Kwon, Sunjong, Chang, Young-Hwan, Thibault, Guillume, Chin, Koei, Nederlof, Michel, Gray, Joe, Gibbs, Summer L
Published in Proceedings of SPIE, the international society for optical engineering (01.02.2019)
Published in Proceedings of SPIE, the international society for optical engineering (01.02.2019)
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