Integrative approaches for finding modular structure in biological networks
Mitra, Koyel, Carvunis, Anne-Ruxandra, Ramesh, Sanath Kumar, Ideker, Trey
Published in Nature reviews. Genetics (01.10.2013)
Published in Nature reviews. Genetics (01.10.2013)
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Journal Article
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences
Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Castilho Coelho, Nelson, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
Published in Nature communications (07.02.2020)
Published in Nature communications (07.02.2020)
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Journal Article
The meanings of 'function' in biology and the problematic case of de novo gene emergence
Keeling, Diane Marie, Garza, Patricia, Nartey, Charisse Michelle, Carvunis, Anne-Ruxandra
Published in eLife (01.11.2019)
Published in eLife (01.11.2019)
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Journal Article
Genome-wide identification of Pseudomonas aeruginosa virulence-related genes using a Caenorhabditis elegans infection model
Feinbaum, Rhonda L, Urbach, Jonathan M, Liberati, Nicole T, Djonovic, Slavica, Adonizio, Allison, Carvunis, Anne-Ruxandra, Ausubel, Frederick M
Published in PLoS pathogens (01.07.2012)
Published in PLoS pathogens (01.07.2012)
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Journal Article
Origins, evolution, and physiological implications of de novo genes in yeast
Parikh, Saurin B., Houghton, Carly, Van Oss, S. Branden, Wacholder, Aaron, Carvunis, Anne‐Ruxandra
Published in Yeast (Chichester, England) (01.09.2022)
Published in Yeast (Chichester, England) (01.09.2022)
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Journal Article
RNF219 regulates CCR4-NOT function in mRNA translation and deadenylation
Guénolé, Aude, Velilla, Fabien, Chartier, Aymeric, Rich, April, Carvunis, Anne-Ruxandra, Sardet, Claude, Simonelig, Martine, Sobhian, Bijan
Published in Scientific reports (03.06.2022)
Published in Scientific reports (03.06.2022)
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Journal Article
Mapping transcription factor interactome networks using HaloTag protein arrays
Yazaki, Junshi, Galli, Mary, Kim, Alice Y., Nito, Kazumasa, Aleman, Fernando, Chang, Katherine N., Carvunis, Anne-Ruxandra, Quan, Rosa, Nguyen, Hien, Song, Liang, Alvarez, José M., Huang, Shao-shan Carol, Chen, Huaming, Ramachandran, Niroshan, Altmann, Stefan, Gutiérrez, Rodrigo A., Hill, David E., Schroeder, Julian I., Chory, Joanne, LaBaer, Joshua, Vidal, Marc, Braun, Pascal, Ecker, Joseph R.
Published in Proceedings of the National Academy of Sciences - PNAS (19.07.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (19.07.2016)
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Journal Article
Literature-curated protein interaction datasets
Cusick, Michael E, Vidal, Marc, Yu, Haiyuan, Smolyar, Alex, Venkatesan, Kavitha, Carvunis, Anne-Ruxandra, Simonis, Nicolas, Rual, Jean-François, Borick, Heather, Braun, Pascal, Dreze, Matija, Vandenhaute, Jean, Galli, Mary, Yazaki, Junshi, Hill, David E, Ecker, Joseph R, Roth, Frederick P
Published in Nature methods (01.01.2009)
Published in Nature methods (01.01.2009)
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Journal Article
Integrative detection of genome-wide translation using iRibo
Turcan, Alistair, Lee, Jiwon, Wacholder, Aaron, Carvunis, Anne-Ruxandra
Published in STAR protocols (15.03.2024)
Published in STAR protocols (15.03.2024)
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Journal Article
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans
Shingles, Jane, Tasan, Murat, Reece-Hoyes, John, Venkatesan, Kavitha, Tu, Domena, Roth, Frederick P, Hidalgo, César A, Bertin, Nicolas, Blanc, Aurélie, Dupuy, Denis, Hunt-Newbury, Rebecca, Rosenberg, Jennifer, Moerman, Donald G, Carnec, Alain, Lee, David, Baillie, David, Johnsen, Robert, Mohler, William A, Vidal, Marc, Barabási, Albert-László, Pulak, Rock, Hope, Ian A, Carvunis, Anne-Ruxandra, Viveiros, Ryan, Le Peuch, Christian, Svrzikapa, Nenad
Published in Nature biotechnology (01.06.2007)
Published in Nature biotechnology (01.06.2007)
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Journal Article
Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences
Vakirlis, Nikolaos, Acar, Omer, Hsu, Brian, Coelho, Nelson Castilho, Van Oss, S. Branden, Wacholder, Aaron, Medetgul-Ernar, Kate, Bowman, Ray W., Hines, Cameron P., Iannotta, John, Parikh, Saurin Bipin, McLysaght, Aoife, Camacho, Carlos J., O’Donnell, Allyson F., Ideker, Trey, Carvunis, Anne-Ruxandra
Published in Nature communications (04.01.2021)
Published in Nature communications (04.01.2021)
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Journal Article
Evidence for a common evolutionary rate in metazoan transcriptional networks
Carvunis, Anne-Ruxandra, Wang, Tina, Skola, Dylan, Yu, Alice, Chen, Jonathan, Kreisberg, Jason F, Ideker, Trey
Published in eLife (18.12.2015)
Published in eLife (18.12.2015)
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Journal Article
New genes from borrowed parts
Wacholder, Aaron, Carvunis, Anne-Ruxandra
Published in Science (American Association for the Advancement of Science) (19.02.2021)
Published in Science (American Association for the Advancement of Science) (19.02.2021)
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Journal Article